# Generated by roxygen2: do not edit by hand

export(createGroupByAttribute)
export(createGroupByColumn)
export(diffAnalyses)
export(ensemblToUniprot)
export(filterGroups)
export(getColumnsTime)
export(getDownloadsFolder)
export(getFirehoseCohorts)
export(getFirehoseDataTypes)
export(getFirehoseDates)
export(getMatchingSamples)
export(getPSIperPatient)
export(getPatientFromSample)
export(getSplicingEventTypes)
export(groupPerPatient)
export(groupPerSample)
export(isFirehoseUp)
export(labelBasedOnCutoff)
export(listSplicingAnnotations)
export(loadAnnotation)
export(loadFirehoseData)
export(loadLocalFiles)
export(optimalPSIcutoff)
export(parseMatsAnnotation)
export(parseMisoAnnotation)
export(parseSampleGroups)
export(parseSplicingEvent)
export(parseSuppaAnnotation)
export(parseVastToolsAnnotation)
export(performPCA)
export(plotDistribution)
export(plotPCA)
export(plotProtein)
export(plotSurvivalCurves)
export(plotTranscripts)
export(plotVariance)
export(prepareAnnotationFromEvents)
export(processSurvTerms)
export(psichomics)
export(quantifySplicing)
export(queryEnsemblByEvent)
export(queryEnsemblByGene)
export(readFile)
export(survdiff.survTerms)
export(survfit.survTerms)
export(testSurvival)
importFrom(AnnotationHub,AnnotationHub)
importFrom(AnnotationHub,query)
importFrom(DT,JS)
importFrom(DT,dataTableOutput)
importFrom(DT,dataTableProxy)
importFrom(DT,renderDataTable)
importFrom(DT,replaceData)
importFrom(R.utils,capitalize)
importFrom(R.utils,evalWithTimeout)
importFrom(Sushi,labelgenome)
importFrom(Sushi,plotGenes)
importFrom(Sushi,zoomsregion)
importFrom(XML,getNodeSet)
importFrom(XML,xmlAttrs)
importFrom(XML,xmlRoot)
importFrom(XML,xmlToList)
importFrom(XML,xmlTreeParse)
importFrom(data.table,fread)
importFrom(digest,digest)
importFrom(fastmatch,fmatch)
importFrom(highcharter,"%>%")
importFrom(highcharter,JS)
importFrom(highcharter,fa_icon_mark)
importFrom(highcharter,hc_add_series)
importFrom(highcharter,hc_chart)
importFrom(highcharter,hc_credits)
importFrom(highcharter,hc_exporting)
importFrom(highcharter,hc_legend)
importFrom(highcharter,hc_plotOptions)
importFrom(highcharter,hc_subtitle)
importFrom(highcharter,hc_title)
importFrom(highcharter,hc_tooltip)
importFrom(highcharter,hc_xAxis)
importFrom(highcharter,hc_yAxis)
importFrom(highcharter,hchart)
importFrom(highcharter,highchart)
importFrom(highcharter,highchartOutput)
importFrom(highcharter,list_parse)
importFrom(highcharter,renderHighchart)
importFrom(httr,GET)
importFrom(httr,content)
importFrom(httr,http_error)
importFrom(httr,stop_for_status)
importFrom(httr,timeout)
importFrom(httr,warn_for_status)
importFrom(jsonlite,fromJSON)
importFrom(jsonlite,toJSON)
importFrom(methods,is)
importFrom(miscTools,colMedians)
importFrom(miscTools,rowMedians)
importFrom(plyr,dlply)
importFrom(plyr,ldply)
importFrom(plyr,rbind.fill)
importFrom(shiny,HTML)
importFrom(shiny,NS)
importFrom(shiny,Progress)
importFrom(shiny,a)
importFrom(shiny,actionButton)
importFrom(shiny,br)
importFrom(shiny,callModule)
importFrom(shiny,checkboxGroupInput)
importFrom(shiny,checkboxInput)
importFrom(shiny,column)
importFrom(shiny,conditionalPanel)
importFrom(shiny,div)
importFrom(shiny,downloadButton)
importFrom(shiny,downloadHandler)
importFrom(shiny,downloadLink)
importFrom(shiny,fileInput)
importFrom(shiny,fixedRow)
importFrom(shiny,fluidRow)
importFrom(shiny,h1)
importFrom(shiny,h2)
importFrom(shiny,h3)
importFrom(shiny,h4)
importFrom(shiny,h5)
importFrom(shiny,helpText)
importFrom(shiny,hr)
importFrom(shiny,icon)
importFrom(shiny,includeCSS)
importFrom(shiny,includeScript)
importFrom(shiny,isolate)
importFrom(shiny,mainPanel)
importFrom(shiny,modalButton)
importFrom(shiny,modalDialog)
importFrom(shiny,navbarMenu)
importFrom(shiny,navbarPage)
importFrom(shiny,numericInput)
importFrom(shiny,observe)
importFrom(shiny,observeEvent)
importFrom(shiny,p)
importFrom(shiny,parseQueryString)
importFrom(shiny,plotOutput)
importFrom(shiny,radioButtons)
importFrom(shiny,reactive)
importFrom(shiny,removeModal)
importFrom(shiny,renderPlot)
importFrom(shiny,renderText)
importFrom(shiny,renderUI)
importFrom(shiny,runApp)
importFrom(shiny,safeError)
importFrom(shiny,selectInput)
importFrom(shiny,selectizeInput)
importFrom(shiny,shinyApp)
importFrom(shiny,shinyUI)
importFrom(shiny,showModal)
importFrom(shiny,sidebarLayout)
importFrom(shiny,sidebarPanel)
importFrom(shiny,sliderInput)
importFrom(shiny,span)
importFrom(shiny,stopApp)
importFrom(shiny,tabPanel)
importFrom(shiny,tabsetPanel)
importFrom(shiny,tagAppendAttributes)
importFrom(shiny,tagAppendChild)
importFrom(shiny,tagList)
importFrom(shiny,tags)
importFrom(shiny,textAreaInput)
importFrom(shiny,textInput)
importFrom(shiny,textOutput)
importFrom(shiny,uiOutput)
importFrom(shiny,updateSelectizeInput)
importFrom(shiny,updateSliderInput)
importFrom(shiny,updateTabsetPanel)
importFrom(shiny,updateTextInput)
importFrom(shinyBS,bsCollapse)
importFrom(shinyBS,bsCollapsePanel)
importFrom(shinyBS,bsModal)
importFrom(shinyBS,bsTooltip)
importFrom(shinyBS,toggleModal)
importFrom(shinyjs,addClass)
importFrom(shinyjs,disable)
importFrom(shinyjs,disabled)
importFrom(shinyjs,enable)
importFrom(shinyjs,hidden)
importFrom(shinyjs,hide)
importFrom(shinyjs,onclick)
importFrom(shinyjs,removeClass)
importFrom(shinyjs,runjs)
importFrom(shinyjs,show)
importFrom(shinyjs,toggleClass)
importFrom(shinyjs,toggleState)
importFrom(shinyjs,useShinyjs)
importFrom(stats,anova)
importFrom(stats,complete.cases)
importFrom(stats,cor)
importFrom(stats,density)
importFrom(stats,fisher.test)
importFrom(stats,fligner.test)
importFrom(stats,formula)
importFrom(stats,kruskal.test)
importFrom(stats,lm)
importFrom(stats,median)
importFrom(stats,optim)
importFrom(stats,p.adjust)
importFrom(stats,pchisq)
importFrom(stats,prcomp)
importFrom(stats,setNames)
importFrom(stats,t.test)
importFrom(stats,var)
importFrom(stats,wilcox.test)
importFrom(stringr,str_split_fixed)
importFrom(survival,Surv)
importFrom(survival,coxph)
importFrom(survival,survdiff)
importFrom(survival,survfit)
importFrom(tools,file_ext)
importFrom(tools,file_path_sans_ext)
importFrom(utils,download.file)
importFrom(utils,head)
importFrom(utils,read.delim)
importFrom(utils,read.table)
importFrom(utils,untar)
importFrom(utils,write.table)
