export(
  loadMAdata,
  runQC,
  extractFactors,
  diffExp,
  polarPlot,
  loadGSC,
  runGSA,
  GSAsummaryTable,
  geneSetSummary,
  networkPlot,
  consensusScores,
  consensusHeatmap,
  runGSAhyper,
  GSAheatmap,
  writeFilesForKiwi
)

S3method(print, ArrayData)
S3method(print, GSC)
S3method(print, GSAres)

import(
  BiocGenerics,
  Biobase
)

importFrom(gplots, heatmap.2, venn)
importFrom(marray, maColorBar)
importFrom(relations, relation_class_ids, relation_consensus)
importFrom(grDevices, colorRampPalette, dev.new, dev.off, pdf, rainbow)
importFrom(graphics, abline, barplot, layout, legend, lines, mtext, par, plot, plot.new, points, text, title)
importFrom(stats, fisher.test, median, model.matrix, p.adjust, pchisq, pnorm, prcomp, qnorm, rnorm, sd, wilcox.test)
importFrom(utils, capture.output, read.delim, write.table)
importFrom(igraph, graph.adjacency, ecount, vcount, ends, layout_with_fr, layout_with_lgl, layout_with_kk, layout_with_graphopt, layout_in_circle)
importFrom(fgsea, fgsea)
