nucleR-package	nucleR-package
.export.bed	export.bed
controlCorrection	controlCorrection
controlCorrection,list-method	controlCorrection
controlCorrection,numeric-method	controlCorrection
controlCorrection,Rle-method	controlCorrection
controlCorrection,SimpleRleList-method	controlCorrection
coverage.rpm	coverage.rpm
export.bed	export.bed
export.bed,CompressedIRangesList-method	export.bed
export.bed,GRanges-method	export.bed
export.bed,IRanges-method	export.bed
export.bed,RangedData-method	export.bed
export.wig	export.wig
filterFFT	filterFFT
filterFFT,list-method	filterFFT
filterFFT,numeric-method	filterFFT
filterFFT,Rle-method	filterFFT
filterFFT,SimpleRleList-method	filterFFT
fragmentLenDetect	fragmentLenDetect
fragmentLenDetect,AlignedRead-method	fragmentLenDetect
fragmentLenDetect,RangedData-method	fragmentLenDetect
mergeCalls	mergeCalls
nucleosome_htseq	nucleosome_htseq
nucleosome_tiling	nucleosome_tiling
nucleR	nucleR-package
pcKeepCompDetect	pcKeepCompDetect
peakDetection	peakDetection
peakDetection,list-method	peakDetection
peakDetection,numeric-method	peakDetection
peakScoring	peakScoring
peakScoring,IRanges-method	peakScoring
peakScoring,IRangesList-method	peakScoring
peakScoring,list-method	peakScoring
peakScoring,numeric-method	peakScoring
plotPeaks	plotPeaks
plotPeaks,data.frame-method	plotPeaks
plotPeaks,IRanges-method	plotPeaks
plotPeaks,numeric-method	plotPeaks
plotPeaks,RangedData-method	plotPeaks
processReads	processReads
processReads,AlignedRead-method	processReads
processReads,RangedData-method	processReads
processTilingArray	processTilingArray
readBAM	readBAM
syntheticNucMap	syntheticNucMap
