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| mogsa-package | Multiple omics clustering and gene set analysis |
| annotate.gs | Summary annotation information of a gene set |
| bootMbpca | Bootstrap mbpca to estimate the coherence of different data sets |
| bootMbpcaK | An internal function called by 'bootMbpca'. |
| box.gs.feature | boxplot of gene set variables across all samples. |
| combine | Combine two objects of class 'mgsa' into one. |
| combine-method | Combine two objects of class 'mgsa' into one. |
| combine-methods | Combine two objects of class 'mgsa' into one. |
| decompose.gs.group | Data-wise or PC-wise decomposition of gene set scores for all observations. |
| decompose.gs.ind | Data-wise or PC-wise decomposition of gene set scores for a single observation. |
| deflat | deflat function used by 'mbpca' |
| distMoa | Calculate the distance matrix from an object of class 'moa-class'. |
| getmgsa | get values in an object of class "mgsa". |
| GIS | calculate gene influential scores of genes in a gene set. |
| matpower | compute the power of a matrix |
| mbpca | Extension of PCA to analyze multiple data sets |
| mgsa-class | Class '"mgsa"' |
| moa | Multiple omics data analysis using MFA or STATIS |
| moa-class | Class '"moa"' |
| moa.sup-class | Class '"moa.sup"' |
| moaCoef | Extract the loadings/coefficients from an object of class 'moa-class'. |
| moaScore | Extract global scores from an object of class 'moa-class'. |
| moGap | Gap statistic for clustering latent variables in 'moa-class'. |
| mogsa | multiple omics data integration and gene set analysis |
| msvd | SVD based algorithm to calculate block Score and global scores for 'mbpca'. |
| NCI60_4arrays | Microarray gene expression profiles of the NCI 60 cell lines from 4 different platforms |
| NCI60_4array_supdata | supp data for Microarray gene expression profiles of the NCI 60 cell lines from 4 different platforms |
| nipalsSoftK | NIPALS algorithm with soft thresholding operator |
| pairwise.rv | pairwise RV coefficients. |
| plot-method | Class '"moa"' |
| plot-methods | ~~ Methods for Function 'plot' ~~ |
| plotGS | Plot the gene set space |
| prepGraphite | Prepare pathway gene sets from graphite package |
| prepMsigDB | Conver gmt format file to a list |
| prepSupMoa | Prepare sumpplementary tables for projection by sup.moa or mogsa. |
| processOpt | preprocessing of input data in 'mbpca'. |
| softK | Soft-thresholding operator |
| sup.moa | Projecting supplementary tables on object of class 'moa-class'. |
| toMoa | convert 'mbpca' result to 'moa-class' |
| wsvd | Weighted singular value decomposition (SVD) |