Package: minfi
Version: 1.20.2
Title: Analyze Illumina Infinium DNA methylation arrays
Description: Tools to analyze & visualize Illumina Infinium methylation arrays.
Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
                    email = "kasperdanielhansen@gmail.com"),
             person("Martin", "Aryee", role = "aut"),
             person(c("Rafael", "A."), "Irizarry", role = "aut"),
             person(c("Andrew", "E."), "Jaffe", role = "ctb"),
             person("Jovana", "Maksimovic", role = "ctb"),
             person(c("E.", "Andres"), "Houseman", role = "ctb"),
             person("Jean-Philippe", "Fortin", role = "ctb"),
             person("Tim", "Triche", role = "ctb"),
             person(c("Shan", "V."), "Andrews", role = "ctb"))
Depends: methods, BiocGenerics (>= 0.15.3), Biobase (>= 2.17.8),
        GenomicRanges, SummarizedExperiment (>= 1.1.6), Biostrings,
        bumphunter (>= 1.1.9)
Suggests: IlluminaHumanMethylation450kmanifest (>= 0.2.0),
        IlluminaHumanMethylation450kanno.ilmn12.hg19 (>= 0.2.1),
        minfiData (>= 0.18.0), minfiDataEPIC, FlowSorted.Blood.450k (>=
        1.0.1), RUnit, digest, BiocStyle, knitr, rmarkdown
Imports: S4Vectors, GenomeInfoDb, IRanges, beanplot, RColorBrewer,
        lattice, nor1mix, siggenes, limma, preprocessCore, illuminaio,
        matrixStats (>= 0.50.0), mclust, genefilter, nlme, reshape,
        MASS, quadprog, data.table, GEOquery, stats, grDevices,
        graphics, utils
Collate: generics.R mset.R rset.R rgset.R gmset.R grset.R utils.R
        manifest.R anno.R minfiQC.R getSex.R dmr.R blocks.R plot.R
        plotBetasByType.R preprocess.R preprocessSwan.R
        preprocessQuantile.R preprocessNoob.R preprocessFunnorm.R qc.R
        read.450k.R read.meth.R read.geo.R read.manifest.R bumphunter.R
        estimateCellCounts.R gaphunter.R compartments.R combineArrays.R
VignetteBuilder: knitr
License: Artistic-2.0
URL: https://github.com/kasperdanielhansen/minfi
BugReports: https://github.com/kasperdanielhansen/minfi/issues
LazyData: yes
biocViews: DNAMethylation, DifferentialMethylation, Epigenetics,
        Microarray, MethylationArray, MultiChannel, TwoChannel,
        DataImport, Normalization, Preprocessing, QualityControl
NeedsCompilation: no
Packaged: 2016-12-17 00:14:18 UTC; biocbuild
Author: Kasper Daniel Hansen [cre, aut],
  Martin Aryee [aut],
  Rafael A. Irizarry [aut],
  Andrew E. Jaffe [ctb],
  Jovana Maksimovic [ctb],
  E. Andres Houseman [ctb],
  Jean-Philippe Fortin [ctb],
  Tim Triche [ctb],
  Shan V. Andrews [ctb]
Maintainer: Kasper Daniel Hansen <kasperdanielhansen@gmail.com>
Built: R 3.3.2; ; 2016-12-17 04:34:23 UTC; windows
