Package: methyAnalysis
Type: Package
Title: DNA methylation data analysis and visualization
Version: 1.16.1
Date: 2017-01-09
Depends: R (>= 2.10), grid, BiocGenerics, IRanges, GenomeInfoDb,
        GenomicRanges, Biobase (>= 2.34.0), org.Hs.eg.db
Imports: grDevices, stats, utils, lumi, methylumi, Gviz, genoset,
        SummarizedExperiment, IRanges, GenomicRanges,
        VariantAnnotation, rtracklayer, GenomicFeatures, annotate,
        Biobase (>= 2.5.5), AnnotationDbi, genefilter, biomaRt,
        methods, parallel
Suggests: FDb.InfiniumMethylation.hg19,
        TxDb.Hsapiens.UCSC.hg19.knownGene
Author: Pan Du, Richard Bourgon
Maintainer: Pan Du <dupan.mail@gmail.com>, Lei Huang <lhuang@bsd.uchicago.edu>, Gang Feng <g-feng@northwestern.edu>
Description: The methyAnalysis package aims for the DNA methylation data  
     analysis and visualization. A MethyGenoSet class is defined to keep the 
     chromosome location information together with the data. The package also includes
     functions of estimating the methylation levels from Methy-Seq data.
License: Artistic-2.0
LazyLoad: yes
biocViews: Microarray, DNAMethylation, Visualization
Collate: 'MethyGenoSet-class.R' 'methyAnalysis.R'
        'heatmapByChromosome.R' 'methyl-seq.R'
NeedsCompilation: no
Packaged: 2017-01-12 00:25:34 UTC; biocbuild
Built: R 3.3.2; ; 2017-01-12 04:28:34 UTC; windows
