Package: maftools
Type: Package
Title: Summarize, Analyze and Visualize MAF files
Version: 1.0.55
Date: 2015-12-14
Author: Anand Mayakonda <anand_mt@hotmail.com>
Maintainer: Anand Mayakonda <anand_mt@hotmail.com>
Description: Analyze and visualize Mutation Annotation Format (MAF) files from large scale sequencing studies. This package provides various functions to perform most commonly used analyses in cancer genomics and to create feature rich customizable visualzations with minimal effort.
URL: https://github.com/PoisonAlien/maftools
BugReports: https://github.com/PoisonAlien/maftools/issues
License: MIT + file LICENSE
LazyData: TRUE
Depends: R (>= 3.3)
Imports: data.table, ggplot2(>= 2.0), cowplot, cometExactTest,
        RColorBrewer, NMF, ggrepel, methods, ComplexHeatmap, mclust,
        VariantAnnotation, Biostrings, Rsamtools, rjson, grid,
        DPpackage, wordcloud, grDevices, changepoint
RoxygenNote: 5.0.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
biocViews: DataRepresentation, DNASeq, Visualization, DriverMutation,
        VariantAnnotation, FeatureExtraction, Classification,
        SomaticMutation, Sequencing, FunctionalGenomics
NeedsCompilation: no
Packaged: 2017-03-18 03:29:17 UTC; biocbuild
Built: R 3.3.3; ; 2017-03-18 06:17:31 UTC; windows
