Package: hiAnnotator
Title: Functions for annotating GRanges objects
Version: 1.8.0
Date: 2016-05-05
Author: Nirav V Malani <malnirav@gmail.com>
Maintainer: Nirav V Malani <malnirav@gmail.com>
Description: hiAnnotator contains set of functions which allow users to
    annotate a GRanges object with custom set of annotations. The
    basic philosophy of this package is to take two GRanges
    objects (query & subject) with common set of seqnames (i.e.
    chromosomes) and return associated annotation per seqnames and rows
    from the query matching seqnames and rows from the subject (i.e.
    genes or cpg islands). The package comes with three types of annotation
    functions which calculates if a position from query is: within a feature,
    near a feature, or count features in defined window sizes. Moreover, each
    function is equipped with parallel backend to utilize the foreach package.
    In addition, the package is equipped with wrapper functions, which finds
    appropriate columns needed to make a GRanges object from a
    common data frame.
Depends: GenomicRanges, R (>= 2.10)
Imports: foreach, iterators, rtracklayer, dplyr, BSgenome, ggplot2,
        scales
License: GPL (>= 2)
VignetteBuilder: knitr
Suggests: knitr, doParallel, testthat, BiocGenerics
biocViews: Software, Annotation
LazyLoad: yes
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-10-17 23:53:01 UTC; biocbuild
Built: R 3.3.1; ; 2016-10-18 02:59:13 UTC; windows
