# Generated by roxygen2: do not edit by hand

S3method(as.binary,phylo)
S3method(as.data.frame,phylo)
S3method(fortify,apeBootstrap)
S3method(fortify,beast)
S3method(fortify,codeml)
S3method(fortify,codeml_mlc)
S3method(fortify,hyphy)
S3method(fortify,jplace)
S3method(fortify,multiPhylo)
S3method(fortify,nhx)
S3method(fortify,obkData)
S3method(fortify,paml_rst)
S3method(fortify,phangorn)
S3method(fortify,phylip)
S3method(fortify,phylo)
S3method(fortify,phylo4)
S3method(fortify,phylo4d)
S3method(fortify,phyloseq)
S3method(fortify,r8s)
S3method(fortify,raxml)
S3method(identify,gg)
S3method(print,beastList)
export("%+>%")
export("%<%")
export("%<+%")
export("%>%")
export(.)
export(Date2decimal)
export(MRCA)
export(StatBalance)
export(StatHilight)
export(add_colorbar)
export(annotation_image)
export(apeBoot)
export(as.binary)
export(as.polytomy)
export(collapse)
export(decimal2Date)
export(download.phylopic)
export(expand)
export(facet_plot)
export(flip)
export(geom_aline)
export(geom_balance)
export(geom_cladelabel)
export(geom_hilight)
export(geom_label2)
export(geom_nodepoint)
export(geom_point2)
export(geom_range)
export(geom_rootpoint)
export(geom_segment2)
export(geom_strip)
export(geom_taxalink)
export(geom_text2)
export(geom_tiplab)
export(geom_tiplab2)
export(geom_tippoint)
export(geom_tree)
export(geom_tree2)
export(geom_treescale)
export(get.fields)
export(get.offspring.tip)
export(get.path)
export(get.phylopic)
export(get.placements)
export(get.subs)
export(get.tipseq)
export(get.tree)
export(get.treeinfo)
export(get.treetext)
export(getNodeNum)
export(getRoot)
export(get_balance_position)
export(get_clade_position)
export(get_heatmap_column_position)
export(get_taxa_name)
export(ggtree)
export(gheatmap)
export(groupClade)
export(groupOTU)
export(gzoom)
export(inset)
export(mask)
export(merge_tree)
export(msaplot)
export(multiplot)
export(nodebar)
export(nodeid)
export(nodepie)
export(open_tree)
export(phyPML)
export(phylopic)
export(plot)
export(pmlToSeq)
export(raxml2nwk)
export(read.baseml)
export(read.beast)
export(read.codeml)
export(read.codeml_mlc)
export(read.hyphy)
export(read.jplace)
export(read.nhx)
export(read.paml_rst)
export(read.phylip)
export(read.phyloT)
export(read.r8s)
export(read.raxml)
export(read.tree)
export(reroot)
export(rescale_tree)
export(rotate)
export(rotate_tree)
export(rtree)
export(scaleClade)
export(scale_color)
export(scale_x_ggtree)
export(stat_balance)
export(stat_hilight)
export(subview)
export(theme_inset)
export(theme_transparent)
export(theme_tree)
export(theme_tree2)
export(viewClade)
export(write.jplace)
exportClasses(apeBootstrap)
exportClasses(beast)
exportClasses(codeml)
exportClasses(codeml_mlc)
exportClasses(hyphy)
exportClasses(jplace)
exportClasses(nhx)
exportClasses(paml_rst)
exportClasses(phangorn)
exportClasses(phylip)
exportClasses(r8s)
exportClasses(raxml)
exportMethods(get.fields)
exportMethods(get.placements)
exportMethods(get.subs)
exportMethods(get.tipseq)
exportMethods(get.tree)
exportMethods(get.treeinfo)
exportMethods(get.treetext)
exportMethods(groupClade)
exportMethods(groupOTU)
exportMethods(gzoom)
exportMethods(plot)
exportMethods(reroot)
exportMethods(scale_color)
exportMethods(show)
importFrom(ape,Nnode)
importFrom(ape,Ntip)
importFrom(ape,di2multi)
importFrom(ape,drop.tip)
importFrom(ape,extract.clade)
importFrom(ape,getMRCA)
importFrom(ape,is.binary.tree)
importFrom(ape,ladderize)
importFrom(ape,print.phylo)
importFrom(ape,read.nexus)
importFrom(ape,read.tree)
importFrom(ape,reorder.phylo)
importFrom(ape,which.edge)
importFrom(ape,write.tree)
importFrom(ggplot2,GeomCurve)
importFrom(ggplot2,GeomLabel)
importFrom(ggplot2,GeomPoint)
importFrom(ggplot2,GeomRect)
importFrom(ggplot2,GeomSegment)
importFrom(ggplot2,GeomText)
importFrom(ggplot2,Stat)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,annotate)
importFrom(ggplot2,annotation_custom)
importFrom(ggplot2,coord_cartesian)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,coord_polar)
importFrom(ggplot2,draw_key_path)
importFrom(ggplot2,draw_key_point)
importFrom(ggplot2,draw_key_text)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,facet_grid)
importFrom(ggplot2,fortify)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_rect)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggplotGrob)
importFrom(ggplot2,ggplot_build)
importFrom(ggplot2,ggproto)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,last_plot)
importFrom(ggplot2,layer)
importFrom(ggplot2,position_nudge)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_discrete)
importFrom(ggplot2,scale_fill_gradient)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_x_date)
importFrom(ggplot2,scale_x_reverse)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,xlab)
importFrom(ggplot2,xlim)
importFrom(ggplot2,ylab)
importFrom(ggplot2,ylim)
importFrom(grDevices,col2rgb)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,rgb)
importFrom(graphics,identify)
importFrom(grid,convertX)
importFrom(grid,convertY)
importFrom(grid,dataViewport)
importFrom(grid,grid.layout)
importFrom(grid,grid.locator)
importFrom(grid,grid.newpage)
importFrom(grid,pushViewport)
importFrom(grid,rasterGrob)
importFrom(grid,unit)
importFrom(grid,viewport)
importFrom(jsonlite,fromJSON)
importFrom(magrittr,"%<>%")
importFrom(magrittr,"%>%")
importFrom(magrittr,add)
importFrom(magrittr,equals)
importFrom(methods,"slot<-")
importFrom(methods,.hasSlot)
importFrom(methods,is)
importFrom(methods,missingArg)
importFrom(methods,new)
importFrom(methods,show)
importFrom(methods,slot)
importFrom(stats4,plot)
importFrom(tidyr,gather)
importFrom(utils,download.file)
importFrom(utils,modifyList)
importFrom(utils,packageDescription)
importFrom(utils,packageVersion)
