GGbio                   class ggbio
Grob-class              Grob getter
Ideogram                Plot single chromosome with cytoband
Plot                    Plot class
Tracked                 Tracked class
arrangeGrobByParsingLegend
                        Arrange grobs by parse their legend.
autoplot                Generic autoplot function
geom_alignment          Alignment geoms for GRanges object
geom_arch               Arch geoms for GRanges object
geom_arrow              Arrow geoms for GRanges object
geom_arrowrect          Arrowrect geoms for GRanges object
geom_bar                Segment geoms for GRanges object
geom_chevron            Chevron geoms for GRanges object
geom_rect               Rect geoms for GRanges object
geom_segment            Segment geoms for GRanges object
ggplot.Vector           ggplot methods
ggsave                  Save a ggplot object or tracks with sensible
                        defaults
layout_circle           Create a circle layout
layout_karyogram        Create a karyogram layout
plotFragLength          Plot estimated fragment length for paired-end
                        RNA-seq data
plotGrandLinear         Manhattan for GWAS
plotRangesLinkedToData
                        Plot Ranges Linked with Data
plotSpliceSum           Plot Splice Summary from RNA-seq data
plotStackedOverview     Plot stacked overview
rescale                 rescale ggplot object
scale_fill_fold_change
                        scale color for fold change values
scale_fill_giemsa       scale filled color to customized giemsa color.
scale_x_sequnit         scale x by unit
stat_aggregate          Generates summaries on the specified windows
stat_bin                Binning method
stat_coverage           Calculate coverage
stat_gene               Calculate gene structure
stat_identity           Transform the data to a data.frame and for
                        multiple geoms.
stat_mismatch           Calculate mismatch summary
stat_reduce             Reduce an object.
stat_slice              Slice Rle/RleList to view them as bar or
                        heatmap.
stat_stepping           Calculate stepping levels
stat_table              Tabulate a GRanges object
theme_null              theme in ggbio
tracks                  Tracks for genomic graphics
zoom                    Simple navigation for ggbio object.
