Package: genefu
Type: Package
Title: Computation of Gene Expression-Based Signatures in Breast Cancer
Version: 2.6.0
Date: 2015-10-28
Description: Description: This package contains functions implementing various tasks usually required by gene expression analysis, especially in breast cancer studies: gene mapping between different microarray platforms, identification of molecular subtypes, implementation of published gene signatures, gene selection, and survival analysis.
Author: Deena M.A. Gendoo, Natchar Ratanasirigulchai, Markus S. Schroder, Laia Pare, Joel S. Parker, Aleix Prat, and Benjamin Haibe-Kains
Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca>, Markus Schroeder <markus.schroeder@ucdconnect.ie>
biocViews: DifferentialExpression, GeneExpression, Visualization,
        Clustering, Classification
Depends: survcomp, mclust, limma,biomaRt, iC10, AIMS, R (>= 2.10)
Suggests: GeneMeta, breastCancerVDX, breastCancerMAINZ,
        breastCancerTRANSBIG, breastCancerUPP, breastCancerUNT,
        breastCancerNKI, rmeta, Biobase, xtable, knitr, caret, survival
Imports: amap
VignetteBuilder: knitr
License: Artistic-2.0
URL: http://www.pmgenomics.ca/bhklab/software/genefu
LazyData: yes
NeedsCompilation: no
Packaged: 2016-10-17 23:18:47 UTC; biocbuild
Built: R 3.3.1; ; 2016-10-18 02:31:29 UTC; windows
