addAMDISPeaks           Add AMDIS peak detection results
addChromaTOFPeaks       Add ChromaTOF peak detection results
addXCMSPeaks            Add xcms/CAMERA peak detection results
betweenAlignment        Data Structure for "between" alignment of many
                        GCMS samples
calcTimeDiffs           Calculate retention time shifts from profile
                        alignments
clusterAlignment        Data Structure for a collection of all pairwise
                        alignments of GCMS runs
compress                Compress an alignment object
correlationAlignment    Function for correlation-based alignment
                        strategy of multiple GCMS samples
correlationAlignment-class
                        '"correlationAlignment-class"'
dp                      Dynamic programming algorithm, given a
                        similarity matrix
eitherMatrix-class      The 'eitherMatrix' class
exportSpectra           exportSpectra
gatherInfo              Gathers abundance informations from an
                        alignment
imputePeaks             Imputatin of locations of peaks that were
                        undetected
multipleAlignment-class
                        Data Structure for multiple alignment of many
                        GCMS samples
normDotProduct          Normalized Dot Product
parseChromaTOF          Parser for ChromaTOF files
parseELU                Parser for ELU files
peaksAlignment-class    Data Structure for pairwise alignment of 2 GCMS
                        samples
peaksDataset            Data Structure for raw GCMS data and peak
                        detection results
plot                    Plotting functions for GCMS data objects
plotImage               Plot of images of GCMS data
plotSpectra             plotSpectra
progressiveAlignment-class
                        Data Structure for progressive alignment of
                        many GCMS samples
retFatMatrix            retFatMatrix
rmaFitUnit              Fits a robust linear model (RLM) for one
                        metabolite
