# Cartesian plot and contingency test on 16S Microbial data

## Documentation for package ‘eudysbiome’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

eudysbiome-package | eudysbiome.
assignTax | Taxonomic Classification
Cartesian | 2-D Cartesian plane Plots
contingencyCount | Contingency Table Construction
contingencyTest | Contingency test for count data
diffGenera | Differential microbes in Genus-Species table A data frame containing 10 differential genera and the species included, which was to be annotated as '"harmful"' or '"harmless"'.
eudysbiome | eudysbiome.
harmGenera | Manually curated genera annotation table A data frame containing 260 genera annotated as "harmful" and the harmful species included in these genera.
microAnnotate | Genus Annotation
microCount | Microbial count contingency table
microDiff | Differential annotated genera with abundance variations among pair-wise condition comparisons
tableSpecies | Construct a Genus-Species Data Frame