# dagLogo

## Documentation for package ‘dagLogo’ version 1.12.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

dagLogo-package | Visualize significant conserved amino acid sequence pattern in groups based on probability theory
buildBackgroundModel | build background model
colorsets | retrieve color setting for logo
dagBackground-class | Class '"dagBackground"'
dagHeatmap | plot heatmap for test results
dagLogo | plot sequence logo for test results
dagPeptides-class | Class '"dagPeptides"'
ecoli.proteome | the subset proteome of Escherichia coli
fetchSequence | fetch sequence by id
formatSequence | prepare an object of dagPeptides from sequences
nameHash | convert group name to a single character
prepareProteome | prepare proteome for background building
Proteome-class | Class '"Proteome"'
proteome.example | the subset proteome of fruit fly
seq.example | example object of dagPeptides
testDAU | DAU test
testDAUresults-class | Class '"testDAUresults"'