CHANGES IN VERSION 1.5.3
-------------------------

BUG FIXES

    o Fix a bug, ID mapping, in function OutputNovelJun.R


CHANGES IN VERSION 1.5.4
-------------------------

BUG FIXES

    o Fix a bug, novel junction coding sequence on '-' strand, in function OutputNovelJun.R

CHANGES IN VERSION 1.5.5
-------------------------

BUG FIXES

    o Fix a bug in function OutputNovelJun.R

CHANGES IN VERSION 1.8.2
-------------------------

UPDATED FUNCTIONS

    o Update functions PrepareAnnotationEnsembl.R and PrepareAnnotationRefseq.R due to updates in depending packages

CHANGES IN VERSION 1.13.1
-------------------------

BUG FIXES

    o Fix a small bug in function JunctionType.R

NEW FEATURES

    o Update the function OutputVarproseq.R to output a data frame 'snvproseq'
	o Add a function OutputVarprocodingseq.R to output a data frame 'snvprocoding'

CHANGES IN VERSION 1.13.2
-------------------------

UPDATED FUNCTIONS

    o Update functions PrepareAnnotationEnsembl.R and PrepareAnnotationRefseq.R due to updates in depending packages


CHANGES IN VERSION 1.14.1
-------------------------

UPDATED FUNCTIONS

    o Update mouse dbsnp version part in function PrepareAnnotationEnsembl.R
	o Update function OutputVarproseq.R, JunctionType.R and  calculateRPKM.R
	 
NEW FEATURES
	o Update function OutputNovelJun.R to save '_jun_anno.RData', '_coding.RData' and '_junpep.RData', which could be used as input for proBAMr package
	
	