FROM bioconductor/devel_proteomics
MAINTAINER Christian Panse <cp@fgcz.ethz.ch>

RUN sudo apt-get install git -y 

RUN cd /tmp && git clone https://github.com/Bioconductor-mirror/cosmiq.git 

RUN echo "source(\"http://bioconductor.org/biocLite.R\"); biocLite(\"cosmiq\", suppressUpdates=TRUE, ask=FALSE)" | R --no-save

RUN cd /tmp && R CMD build --no-build-vignettes cosmiq \
	#&& R CMD check cosmiq_*.tar.gz \
	&& R CMD INSTALL cosmiq_*.tar.gz \
	&& echo "packageVersion('cosmiq')" | R --no-save
