ClusterExperiment-class
                        Class ClusterExperiment
ClusterExperiment-methods
                        Helper methods for the ClusterExperiment class
RSEC                    Resampling-based Sequential Ensemble Clustering
addClusters,ClusterExperiment,matrix-method
                        Functions to add/remove clusters to
                        ClusterExperiment
clusterContrasts,ClusterExperiment-method
                        Create contrasts for testing DE of a cluster
clusterD                Cluster distance matrix from subsampling
clusterMany,matrix-method
                        Create a matrix of clustering across values of
                        parameters
clusterSingle           General wrapper method to cluster the data
combineMany,matrix,missing-method
                        Find sets of samples that stay together across
                        clusterings
convertClusterLegend    Convert clusterLegend into useful formats
getBestFeatures,matrix-method
                        Function for finding best features associated
                        with clusters
makeDendrogram,ClusterExperiment-method
                        Make hierarchy of set of clusters
mergeClusters,matrix-method
                        Merge clusters based on dendrogram
plotClusters,ClusterExperiment,character-method
                        Visualize cluster assignments across multiple
                        clusterings
plotHeatmap,SummarizedExperiment-method
                        Heatmap for showing clustering results and more
plottingFunctions       Various functions useful for plotting
seqCluster              Program for sequentially clustering, removing
                        cluster, and starting again.
simData                 Simulated data for running examples
subsampleClustering     Cluster subsamples of the data
transform               Transform the original data in a
                        ClusterExperiment object
workflowClusters        Methods for workflow clusters
