# Generated by roxygen2: do not edit by hand

export(bigPalette)
export(clusterD)
export(clusterExperiment)
export(makeBlankData)
export(seqCluster)
export(seqPal1)
export(seqPal2)
export(seqPal3)
export(seqPal4)
export(seqPal5)
export(setBreaks)
export(showBigPalette)
export(showHeatmapPalettes)
export(subsampleClustering)
exportClasses(ClusterExperiment)
exportMethods("[")
exportMethods("clusterLabels<-")
exportMethods("clusterLegend<-")
exportMethods("clusterTypes<-")
exportMethods("coClustering<-")
exportMethods("orderSamples<-")
exportMethods("primaryClusterIndex<-")
exportMethods(RSEC)
exportMethods(addClusters)
exportMethods(clusterContrasts)
exportMethods(clusterExperiment)
exportMethods(clusterInfo)
exportMethods(clusterLabels)
exportMethods(clusterLegend)
exportMethods(clusterMany)
exportMethods(clusterMatrix)
exportMethods(clusterMatrixNamed)
exportMethods(clusterSingle)
exportMethods(clusterTypes)
exportMethods(coClustering)
exportMethods(combineMany)
exportMethods(convertClusterLegend)
exportMethods(getBestFeatures)
exportMethods(makeDendrogram)
exportMethods(mergeClusters)
exportMethods(nClusters)
exportMethods(nFeatures)
exportMethods(nSamples)
exportMethods(orderSamples)
exportMethods(plotClusters)
exportMethods(plotCoClustering)
exportMethods(plotDendrogram)
exportMethods(plotHeatmap)
exportMethods(primaryCluster)
exportMethods(primaryClusterIndex)
exportMethods(primaryClusterNamed)
exportMethods(removeClusters)
exportMethods(removeUnclustered)
exportMethods(setToCurrent)
exportMethods(setToFinal)
exportMethods(show)
exportMethods(transform)
exportMethods(transformation)
exportMethods(workflowClusterDetails)
exportMethods(workflowClusterTable)
exportMethods(workflowClusters)
import(SummarizedExperiment)
import(limma)
import(methods)
importClassesFrom(SummarizedExperiment,SummarizedExperiment)
importClassesFrom(phylobase,phylo4)
importFrom(NMF,aheatmap)
importFrom(RColorBrewer,brewer.pal)
importFrom(RColorBrewer,brewer.pal.info)
importFrom(ape,plot.phylo)
importFrom(cluster,daisy)
importFrom(cluster,pam)
importFrom(cluster,silhouette)
importFrom(dendextend,as.phylo.dendrogram)
importFrom(graphics,plot)
importFrom(howmany,howmany)
importFrom(howmany,lowerbound)
importFrom(limma,makeContrasts)
importFrom(locfdr,locfdr)
importFrom(matrixStats,rowVars)
importFrom(parallel,mclapply)
importFrom(phylobase,ancestors)
importFrom(phylobase,descendants)
importFrom(phylobase,getNode)
importFrom(phylobase,labels)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,mad)
importFrom(stats,prcomp)
importFrom(stats,sd)
importFrom(stats,var)
