chromstaR-package	chromstaR-package
bin2dec	conversion
binned.data	binned.data
binning	binReads
binReads	binReads
callPeaksMultivariate	callPeaksMultivariate
callPeaksReplicates	callPeaksReplicates
callPeaksUnivariate	callPeaksUnivariate
callPeaksUnivariateAllChr	callPeaksUnivariateAllChr
changePostCutoff	changePostCutoff
Chromstar	Chromstar
chromstaR	chromstaR-package
chromstaR-objects	chromstaR-objects
collapseBins	collapseBins
combinatorialStates	combinatorialStates
combinedHMM	combinedMultiHMM
combinedMultiHMM	combinedMultiHMM
combined_model	combined_model
combineMultivariates	combineMultivariates
conversion	conversion
dec2bin	conversion
differentialScoreMax	scores
differentialScoreSum	scores
dzinbinom	zinbinom
enrichmentAtAnnotation	enrichmentAtAnnotation
enrichment_analysis	enrichment_analysis
experiment.table	experiment.table
exportBinnedData	exportBinnedData
exportCombinedMultivariate	exportCombinedMultivariate
exportGRangesAsBedFile	exportGRangesAsBedFile
exportMultivariate	exportMultivariate
exportUnivariates	exportUnivariates
fixedWidthBins	fixedWidthBins
genomicFrequencies	genomicFrequencies
getDistinctColors	getDistinctColors
getStateColors	getStateColors
heatmapCombinations	heatmapCombinations
heatmapCountCorrelation	heatmapCountCorrelation
heatmapTransitionProbs	heatmapTransitionProbs
loadHmmsFromFiles	loadHmmsFromFiles
mergeChroms	mergeChroms
multi.hmm	multiHMM
multiHMM	multiHMM
multivariateSegmentation	multivariateSegmentation
multivariate_model	multivariate_model
plotEnrichCountHeatmap	enrichment_analysis
plotExpression	plotExpression
plotFoldEnrichHeatmap	enrichment_analysis
plotFoldEnrichment	enrichment_analysis
plotHistogram	plotHistogram
plotHistograms	plotHistograms
plotKaryogram	plotKaryogram
plotting	plotting
pzinbinom	zinbinom
qzinbinom	zinbinom
readBamFileAsGRanges	readBamFileAsGRanges
readBedFileAsGRanges	readBedFileAsGRanges
readConfig	readConfig
readCustomBedFile	readCustomBedFile
rzinbinom	zinbinom
scanBinsizes	scanBinsizes
scores	scores
simulateReads	simulateReads
simulateUnivariate	simulateUnivariate
state.brewer	state.brewer
stateBrewer	stateBrewer
subsample	subsample
transitionFrequencies	transitionFrequencies
uni.hmm	uniHMM
uniHMM	uniHMM
unis2pseudomulti	unis2pseudomulti
variableWidthBins	variableWidthBins
writeConfig	writeConfig
zinbinom	zinbinom
