Package: chromstaR
Type: Package
Title: Combinatorial and Differential Chromatin State Analysis for
        ChIP-Seq Data
Version: 1.0.0
Date: 2014-05-03
Author: Aaron Taudt, Maria Colome Tatche, Matthias Heinig, Minh Anh Nguyen
Maintainer: Aaron Taudt <aaron.taudt@gmail.com>
Description: This package implements functions for combinatorial and differential analysis of ChIP-seq data. It includes uni- and multivariate peak-calling, export to genome browser viewable files, and functions for enrichment analyses.
Depends: R (>= 3.3), GenomicRanges, ggplot2, chromstaRData
Imports: methods, utils, grDevices, graphics, stats, foreach,
        doParallel, S4Vectors, GenomeInfoDb, IRanges, reshape2,
        Rsamtools, GenomicAlignments, bamsignals
Suggests: knitr, BiocStyle, testthat, biomaRt, ggbio
License: Artistic-2.0
LazyLoad: yes
VignetteBuilder: knitr
Packaged: 2016-10-18 00:40:06 UTC; biocbuild
biocViews: Software, DifferentialPeakCalling, HiddenMarkovModel,
        ChIPSeq, MultipleComparison
RoxygenNote: 5.0.1
NeedsCompilation: yes
Built: R 3.3.1; i386-w64-mingw32; 2016-10-18 01:37:50 UTC; windows
Archs: i386, x64
