assign_peak_segments    Assign whole peaks to all overlapping defined
                        gene loci.
assign_peaks            Assign peak midpoints to defined gene loci.
calc_peak_gene_overlap
                        Add peak overlap and ratio to result of
                        'num_peaks_per_gene()'
chipenrich              Run ChIP-Enrich on a dataset of ChIP-seq peaks
load_peaks              Convert BEDX+Y data.frames and into GRanges
num_peaks_per_gene      Aggregate peak assignments over the 'geneid'
                        column
plot_dist_to_tss        Plot histogram of distance from peak to nearest
                        TSS
plot_gene_coverage      Plot probability of peak being assigned to a
                        gene vs. gene length
plot_spline_length      Plot probability of peak being assigned to a
                        gene vs. gene length
read_bed                Read BEDX+Y files and convert into GRanges
read_bedgff             Read BEDGFF files and convert into GRanges
supported_genesets      Display supported genesets for gene set
                        enrichment.
supported_genomes       Display supported genomes.
supported_locusdefs     Display supported locus definitions
supported_methods       Display supported gene set enrichment methods.
supported_read_lengths
                        Display supported read lengths for mappability
