Package: chipenrich
Type: Package
Title: Gene Set Enrichment For ChIP-seq Peak Data
Version: 1.12.1
Date: 2016-03-09
Authors@R: c(
	person(c("Ryan","P."),"Welch",role = c("aut","cph"),email = "welchr@umich.edu"),
	person("Chee","Lee",role = c("aut"),email = "cheelee@umich.edu"),
	person(c("Raymond","G."),"Cavalcante",role = c("aut","cre"),email = "rcavalca@umich.edu"),
	person(c("Laura","J."),"Scott",role = c("ths"), email = "ljst@umich.edu"),
	person(c("Maureen","A."),"Sartor",role = c("ths"),email = "sartorma@med.umich.edu"))
Description: ChIP-Enrich performs gene set enrichment testing
    using peaks called from a ChIP-seq experiment. The method empirically
    corrects for confounding factors such as the length of genes,
    and the mappability of the sequence surrounding genes.
biocViews: Software, Bioinformatics, Enrichment, GeneSetEnrichment
License: GPL-3
Imports: chipenrich.data, GenomeInfoDb, GenomicRanges, grid, IRanges,
        lattice, latticeExtra, methods, mgcv, parallel, plyr, rms,
        S4Vectors, stringr
Suggests: BiocStyle, devtools, knitr, rmarkdown, roxygen2, testthat
Depends: R (>= 3.1.0)
LazyLoad: yes
Maintainer: Raymond G. Cavalcante <rcavalca@umich.edu>
RoxygenNote: 5.0.1
VignetteBuilder: knitr
Collate: 'assign_peaks.R' 'test_gam.R' 'test_fisher.R'
        'test_binomial.R' 'test_approx.R' 'peaks_per_gene.R' 'read.R'
        'randomize.R' 'setup.R' 'supported.R' 'utils.R' 'constants.R'
        'plot_spline_length.R' 'plot_gene_coverage.R'
        'plot_dist_to_tss.R' 'chipenrich.R' 'chipenrich_package_doc.R'
NeedsCompilation: no
Packaged: 2017-03-12 23:32:20 UTC; biocbuild
Author: Ryan P. Welch [aut, cph],
  Chee Lee [aut],
  Raymond G. Cavalcante [aut, cre],
  Laura J. Scott [ths],
  Maureen A. Sartor [ths]
Built: R 3.3.2; ; 2017-03-13 01:28:28 UTC; windows
