about	about
canceR	canceR
canceRHelp	canceRHelp
canceR_Vignette	canceR_Vignette
cbind.na	cbind.na
ClinicalData	ClinicalData
dialogGeneClassifier	dialogGeneClassifier
dialoggetGeneListMSigDB	dialoggetGeneListMSigDB
dialogMetOption	dialogMetOption
dialogMut	dialogMut
dialogOptionCircos	dialogOptionCircos
dialogOptionGSEAlm	dialogOptionGSEAlm
dialogOptionPhenoTest	dialogOptionPhenoTest
dialogPlotOption_SkinCor	dialogPlotOption_SkinCor
dialogSamplingGSEA	dialogSamplingGSEA
dialogSelectFiles_GSEA	dialogSelectFiles_GSEA
dialogSpecificMut	dialogSpecificMut
dialogSummary_GSEA	dialogSummary_GSEA
displayInTable	displayInTable
GeneExpMatrix	GeneExpMatrix
getCases	getCases
getCasesGenProfs	getCasesGenProfs
getCircos	getCircos
getClinicalDataMatrix	getClinicalDataMatrix
getClinicData_MultipleCases	getClinicData_MultipleCases
getCor_ExpCNAMet	getCor_ExpCNAMet
geteSet	geteSet
getGCTCLSExample	getGCTCLSExample
getGCT_CLSfiles	getGCT_CLSfiles
getGeneExpMatrix	getGeneExpMatrix
getGeneList	getGeneList
getGeneListExample	getGeneListExample
getGeneListFromMSigDB	getGeneListFromMSigDB
getGenesClassifier	getGenesClassifier
getGenesTree_MultipleCases	getGenesTree_MultipleCases
getGenesTree_SingleCase	getGenesTree_SingleCase
getGenProfs	getGenProfs
getGSEAlm_Diseases	getGSEAlm_Diseases
getGSEAlm_Variables	getGSEAlm_Variables
getInTable	getInTable
getListProfData	getListProfData
getMegaProfData	getMegaProfData
getMetDataMultipleGenes	getMetDataMultipleGenes
getMSigDB	getMSigDB
getMSigDBExample	getMSigDBExample
getMSigDBfile	getMSigDBfile
getMutData	getMutData
getPhenoTest	getPhenoTest
getProfilesDataMultipleGenes	getProfilesDataMultipleGenes
getProfilesDataSingleGene	getProfilesDataSingleGene
getSpecificMut	getSpecificMut
getSummaryGSEA	getSummaryGSEA
getSurvival	getSurvival
getTextWin	getTextWin
GSEA	GSEA
GSEA.Analyze.Sets	GSEA.Analyze.Sets
GSEA.ConsPlot	GSEA.ConsPlot
GSEA.EnrichmentScore	GSEA.EnrichmentScore
GSEA.EnrichmentScore2	GSEA.EnrichmentScore2
GSEA.Gct2Frame	GSEA.Gct2Frame
GSEA.Gct2Frame2	GSEA.Gct2Frame2
GSEA.GeneRanking	GSEA.GeneRanking
GSEA.HeatMapPlot	GSEA.HeatMapPlot
GSEA.HeatMapPlot2	GSEA.HeatMapPlot2
GSEA.NormalizeCols	GSEA.NormalizeCols
GSEA.NormalizeRows	GSEA.NormalizeRows
GSEA.ReadClsFile	GSEA.ReadClsFile
GSEA.Res2Frame	GSEA.Res2Frame
GSEA.Threshold	GSEA.Threshold
GSEA.VarFilter	GSEA.VarFilter
GSEA.write.gct	GSEA.write.gct
Match_GeneList_MSigDB	Match_GeneList_MSigDB
modalDialog	modalDialog
myGlobalEnv	myGlobalEnv
OLD.GSEA.EnrichmentScore	OLD.GSEA.EnrichmentScore
plotModel	plotModel
plot_1Gene_2GenProfs	plot_1Gene_2GenProfs
plot_2Genes_1GenProf	plot_2Genes_1GenProf
rbind.na	rbind.na
Run.GSEA	Run.GSEA
setWorkspace	setWorkspace
testCheckedCaseGenProf	testCheckedCaseGenProf
