# Bayesian Gene eXpression

## Documentation for package ‘bgx’ version 1.40.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

analysis.bgx | Analyse BGX output.
bgx | Fully Bayesian integrated approach to the analysis of Affymetrix GeneChip data
plotDEDensity | Analyse BGX output.
plotDEHistogram | Analyse BGX output.
plotDiffRank | Analyse BGX output.
plotExpressionDensity | Analyse BGX output.
rankByDE | Analyse BGX output.
readOutput.bgx | Read in the output from a BGX run.
standalone.bgx | Fully Bayesian integrated approach to the analysis of Affymetrix GeneChip data