aroma.light-package	aroma.light-package
1. Calibration and Normalization	1._Calibration_and_Normalization
aroma.light	aroma.light-package
averageQuantile	averageQuantile
averageQuantile.list	averageQuantile
averageQuantile.matrix	averageQuantile
backtransformAffine	backtransformAffine
backtransformAffine.matrix	backtransformAffine
backtransformPrincipalCurve	backtransformPrincipalCurve
backtransformPrincipalCurve.matrix	backtransformPrincipalCurve
backtransformPrincipalCurve.numeric	backtransformPrincipalCurve
backtransformXYCurve	fitXYCurve
backtransformXYCurve.matrix	fitXYCurve
calibrateMultiscan	calibrateMultiscan
calibrateMultiscan.matrix	calibrateMultiscan
callNaiveGenotypes	callNaiveGenotypes
callNaiveGenotypes.numeric	callNaiveGenotypes
distanceBetweenLines	distanceBetweenLines
distanceBetweenLines.default	distanceBetweenLines
findPeaksAndValleys	findPeaksAndValleys
findPeaksAndValleys.density	findPeaksAndValleys
findPeaksAndValleys.numeric	findPeaksAndValleys
fitIWPCA	fitIWPCA
fitIWPCA.matrix	fitIWPCA
fitNaiveGenotypes	fitNaiveGenotypes
fitNaiveGenotypes.numeric	fitNaiveGenotypes
fitPrincipalCurve	fitPrincipalCurve
fitPrincipalCurve.matrix	fitPrincipalCurve
fitXYCurve	fitXYCurve
fitXYCurve.matrix	fitXYCurve
iwpca	iwpca
iwpca.matrix	iwpca
likelihood	Non-documented_objects
likelihood.smooth.spline	likelihood.smooth.spline
lines.XYCurveFit	Non-documented_objects
medianPolish	medianPolish
medianPolish.matrix	medianPolish
Non-documented objects	Non-documented_objects
normalizeAffine	normalizeAffine
normalizeAffine.matrix	normalizeAffine
normalizeAverage	normalizeAverage
normalizeAverage.list	normalizeAverage
normalizeAverage.matrix	normalizeAverage
normalizeCurveFit	normalizeCurveFit
normalizeCurveFit.matrix	normalizeCurveFit
normalizeDifferencesToAverage	normalizeDifferencesToAverage
normalizeDifferencesToAverage.list	normalizeDifferencesToAverage
normalizeFragmentLength	normalizeFragmentLength
normalizeFragmentLength.default	normalizeFragmentLength
normalizeLoess	normalizeCurveFit
normalizeLoess.matrix	normalizeCurveFit
normalizeLowess	normalizeCurveFit
normalizeLowess.matrix	normalizeCurveFit
normalizeQuantile	normalizeQuantileRank
normalizeQuantile.default	normalizeQuantileRank
normalizeQuantileRank	normalizeQuantileRank
normalizeQuantileRank.list	normalizeQuantileRank
normalizeQuantileRank.matrix	normalizeQuantileRank.matrix
normalizeQuantileRank.numeric	normalizeQuantileRank
normalizeQuantileSpline	normalizeQuantileSpline
normalizeQuantileSpline.list	normalizeQuantileSpline
normalizeQuantileSpline.matrix	normalizeQuantileSpline
normalizeQuantileSpline.numeric	normalizeQuantileSpline
normalizeRobustSpline	normalizeCurveFit
normalizeRobustSpline.matrix	normalizeCurveFit
normalizeSpline	normalizeCurveFit
normalizeSpline.matrix	normalizeCurveFit
normalizeTumorBoost	normalizeTumorBoost
normalizeTumorBoost.numeric	normalizeTumorBoost
pairedAlleleSpecificCopyNumbers	pairedAlleleSpecificCopyNumbers
pairedAlleleSpecificCopyNumbers.numeric	pairedAlleleSpecificCopyNumbers
plotDensity	plotDensity
plotDensity.data.frame	plotDensity
plotDensity.density	plotDensity
plotDensity.list	plotDensity
plotDensity.matrix	plotDensity
plotDensity.numeric	plotDensity
plotMvsA	plotMvsA
plotMvsA.matrix	plotMvsA
plotMvsAPairs	plotMvsAPairs
plotMvsAPairs.matrix	plotMvsAPairs
plotMvsMPairs	plotMvsMPairs
plotMvsMPairs.matrix	plotMvsMPairs
plotXYCurve	plotXYCurve
plotXYCurve.matrix	plotXYCurve
plotXYCurve.numeric	plotXYCurve
predict.lowess	Non-documented_objects
print,SmoothSplineLikelihood-method	print.SmoothSplineLikelihood
print.SmoothSplineLikelihood	print.SmoothSplineLikelihood
projectUontoV	Non-documented_objects
robustSmoothSpline	robustSmoothSpline
robustSmoothSpline.default	robustSmoothSpline
rowAverages	Non-documented_objects
rowAverages.matrix	Non-documented_objects
sampleCorrelations	sampleCorrelations
sampleCorrelations.matrix	sampleCorrelations
sampleTuples	sampleTuples
sampleTuples.default	sampleTuples
scalarProduct	Non-documented_objects
SmoothSplineLikelihood.print	print.SmoothSplineLikelihood
tr	Non-documented_objects
wpca	wpca
wpca.matrix	wpca
