Package: YAPSA
Type: Package
Title: Yet Another Package for Signature Analysis
Version: 1.0.0
Date: 2015-08-04
Author: Daniel Huebschmann, Zuguang Gu, Matthias Schlesner
Maintainer: Daniel Huebschmann <huebschmann.daniel@googlemail.com>
Imports: lsei, SomaticSignatures, VariantAnnotation, GenomeInfoDb,
        reshape2, gridExtra, corrplot, dendextend, GetoptLong,
        circlize, gtrellis, PMCMR, ComplexHeatmap, KEGGREST, grDevices
Depends: R (>= 3.3.0), GenomicRanges, ggplot2, grid
Description: This package provides functions and routines useful in the
        analysis of somatic signatures (cf. L. Alexandrov et al.,
        Nature 2013). In particular, functions to perform a signature
        analysis with known signatures (LCD = linear combination
        decomposition) and a signature analysis on stratified
        mutational catalogue (SMC = stratify mutational catalogue) are
        provided.
License: GPL-3
Suggests: BSgenome.Hsapiens.UCSC.hg19, testthat, BiocStyle, knitr,
        rmarkdown
VignetteBuilder: knitr
LazyLoad: yes
biocViews: Sequencing, DNASeq, SomaticMutation, Visualization,
        Clustering, GenomicVariation, StatisticalMethod,
        BiologicalQuestion
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-10-18 00:42:26 UTC; biocbuild
Built: R 3.3.1; ; 2016-10-18 05:18:08 UTC; windows
