RUNIT TEST PROTOCOL -- Tue Oct 18 01:18:06 2016 
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Number of test functions: 23 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
VanillaICE unit testing - 23 test functions, 0 errors, 0 failures



Details 
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Test Suite: VanillaICE unit testing 
Test function regexp: ^test.+ 
Test file regexp: ^test.+\.[rR]$ 
Involved directory: 
C:/Users/biocbuild/bbs-3.4-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/unitTests 
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/unitTests/test_ArrayViews.R 
test_ArrayViews: (10 checks) ... OK (0.23 seconds)
test_columnSubset: (1 checks) ... OK (0.64 seconds)
--------------------------- 
Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/unitTests/test_FilterParam.R 
test_FilterParam: (4 checks) ... OK (0.53 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/unitTests/test_HmmParam.R 
test_EmissionParam: (3 checks) ... OK (0 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/unitTests/test_SnpArrayExperiment.R 
test_SnpArrayExperiment: (18 checks) ... OK (0.4 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/unitTests/test_SnpGRanges.R 
test_SnpGRanges: (2 checks) ... OK (0.03 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/unitTests/test_acf2.R 
test_acf2: (1 checks) ... OK (0 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/unitTests/test_hmm.R 
test_hmm_cnset: (2 checks) ... OK (5.22 seconds)
test_state4: (2 checks) ... OK (3.02 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/unitTests/test_rowMAD.R 
test_rowMAD: (1 checks) ... OK (0.02 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/unitTests/test_scaleBy.R 
test_scaleBy: (1 checks) ... OK (0 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/unitTests/test_sweepMode.R 
test_duplicatedMapLocs: (1 checks) ... OK (0.15 seconds)
test_sweepMode.R: (2 checks) ... OK (0.35 seconds)
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Test file: C:/Users/biocbuild/bbs-3.4-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/unitTests/test_viterbi.R 
test_Viterbi: (4 checks) ... OK (0.02 seconds)
test_baf_emission: (3 checks) ... OK (0.03 seconds)
test_cn_NAs: (3 checks) ... OK (0.09 seconds)
test_emission_for_list: (3 checks) ... OK (0.19 seconds)
test_emission_update: (3 checks) ... OK (0.84 seconds)
test_multiple_chromosomes: (2 checks) ... OK (1.62 seconds)
test_null_assignment: (2 checks) ... OK (0.73 seconds)
test_oligoset_comparison: (1 checks) ... OK (0.14 seconds)
test_summarized_exp: (1 checks) ... OK (0.03 seconds)
test_updating: (4 checks) ... OK (0.07 seconds)
