Package: TarSeqQC
Type: Package
Version: 1.4.1
Date: 2016-11-16
Title: TARgeted SEQuencing Experiment Quality Control
Author: Gabriela A. Merino, Cristobal Fresno, Yanina Murua, Andrea S. Llera
    and Elmer A. Fernandez
Maintainer: Gabriela Merino <gmerino@bdmg.com.ar>
Description: The package allows the representation of targeted
    experiment in R. This is based on current packages and
    incorporates functions to do a quality control over this kind
    of experiments and a fast exploration of the sequenced regions.
    An xlsx file is generated as output.
URL: http://www.bdmg.com.ar
License: GPL (>=2)
Depends: R (>= 3.2.1), methods, GenomicRanges, Rsamtools (>= 1.20.4),
        ggplot2, plyr, openxlsx
Imports: grDevices, stats, utils, S4Vectors, IRanges, BiocGenerics,
        reshape2, GenomeInfoDb, BiocParallel, Biostrings, cowplot,
        graphics, GenomicAlignments, Hmisc
Suggests: RUnit
Collate: 'TarSeqQC-package.R' 'TargetExperiment.R'
        'TargetExperimentList.R' 'checkBedFasta.R'
        'TargetExperiment-ampliPanel.R'
        'TargetExperiment-ampliPanel2.R' 'TargetExperiment-getters.R'
        'TargetExperiment-setters.R' 'TargetExperiment-show.R'
        'TargetExperiment-print.R' 'TargetExperiment-pileupCounts.R'
        'TargetExperiment-buildFeaturePanel.R'
        'TargetExperiment-summarizePanel.R'
        'TargetExperiment-initialize.R'
        'TargetExperiment-constructor.R'
        'TargetExperiment-statistics.R' 'TargetExperiment-plot.R'
        'TargetExperiment-ggplotColours.R'
        'TargetExperiment-addStatSummSheet.R'
        'TargetExperiment-plotRegion.R'
        'TargetExperiment-plotFeature.R'
        'TargetExperiment-plotGeneAttrPerFeat.R'
        'TargetExperiment-plotNtdPercentage.R'
        'TargetExperiment-readFrequencies.R'
        'TargetExperiment-myCounts.R'
        'TargetExperiment-plotInOutFeatures.R'
        'TargetExperiment-biasExploration.R'
        'TargetExperiment-buildReport.R'
        'TargetExperiment-plotAttrPerform.R'
        'TargetExperiment-plotAttrExpl.R'
        'TargetExperiment-plotFeatPerform.R'
        'TargetExperiment-plotMetaDataExpl.R'
        'TargetExperimentList-TEList.R'
        'TargetExperimentList-initialize.R'
        'TargetExperimentList-constructor.R'
        'TargetExperimentList-getters.R'
        'TargetExperimentList-setters.R' 'TargetExperimentList-show.R'
        'TargetExperimentList-print.R'
        'TargetExperimentList-statistics.R'
        'TargetExperimentList-plot.R'
        'TargetExperimentList-plotGlobalAttrExpl.R'
        'TargetExperimentList-plotAttrExpl.R'
        'TargetExperimentList-plotPoolPerformance.R'
biocViews: Software, Sequencing, TargetedResequencing, QualityControl,
        Visualization, Coverage, Alignment, DataImport
NeedsCompilation: no
Packaged: 2016-11-26 01:17:31 UTC; biocbuild
RoxygenNote: 5.0.1
Built: R 3.3.2; ; 2016-11-26 06:08:22 UTC; windows
