Package: SeqVarTools
Version: 1.12.0
Type: Package
Title: Tools for variant data
Description: An interface to the fast-access storage format for VCF
        data provided in SeqArray, with tools for common operations and
        analysis.
Author: Stephanie M. Gogarten, Xiuwen Zheng, Adrienne Stilp
Maintainer: Stephanie M. Gogarten <sdmorris@u.washington.edu>, Xiuwen
 Zheng <zhengx@u.washington.edu>, Adrienne Stilp <amstilp@u.washington.edu>
Depends: SeqArray (>= 1.11.17)
Imports: grDevices, graphics, stats, methods, stringr, gdsfmt,
        GenomicRanges, IRanges, S4Vectors, GWASExactHW,
        VariantAnnotation, Biobase, logistf
Suggests: BiocGenerics, BiocStyle, RUnit
License: GPL-3
LazyData: yes
biocViews: SNP, GeneticVariability, Sequencing, Genetics
Collate: AllClasses.R AllGenerics.R AllUtilities.R
        Methods-SeqVarGDSClass.R Methods-SeqVarData.R
        duplicateDiscordance.R hwe.R inbreedCoeff.R mendelErr.R pca.R
        setVariantID.R alternateAlleleDetection.R refFrac.R
        regression.R
NeedsCompilation: no
Packaged: 2016-10-17 23:39:58 UTC; biocbuild
Built: R 3.3.1; ; 2016-10-18 04:43:54 UTC; windows
