Package: SVAPLSseq
Type: Package
Title: SVAPLSseq-An R package to adjust for the hidden factors of
        variability in differential gene expression studies based on
        RNAseq data
Description: The package contains functions that are intended for the
        identification of differentially expressed genes between two
        groups of samples from RNAseq data after adjusting for various
        hidden biological and technical factors of variability.
Version: 1.0.0
Date: 2016-07-13
Author: Sutirtha Chakraborty
Maintainer: Sutirtha Chakraborty <sutirtha_sutir@yahoo.co.in>
Depends: R (>= 3.3)
Imports: methods, stats, SummarizedExperiment, edgeR, ggplot2, limma,
        lmtest, parallel, pls
Suggests: BiocStyle
License: GPL-3
biocViews: GeneExpression, RNASeq, Normalization, BatchEffect
Collate: AllClasses.R AllGenerics.R Methods.R svplsSurr.R svplsTest.R
NeedsCompilation: no
RoxygenNote: 5.0.1
Packaged: 2016-10-18 00:39:34 UTC; biocbuild
Built: R 3.3.1; ; 2016-10-18 05:02:05 UTC; windows
