STATegRa-package	STATegRa
bioDist	bioDist
bioDist,character,character,bioMap,ExpressionSet,ExpressionSet-method	bioDist
bioDistclass	bioDistclass
bioDistFeature	bioDistFeature
bioDistFeature,character,list,numeric-method	bioDistFeature
bioDistFeaturePlot	bioDistFeaturePlot
bioDistW	bioDistW
bioDistW,character,list,matrix-method	bioDistW
bioDistWPlot	bioDistWPlot
bioDistWPlot,character,list,character-method	bioDistWPlot
bioMap	bioMap
biplotRes	biplotRes
biplotRes,caClass,character,numeric,character-method	biplotRes
Block1	STATegRa_data
Block1.PCA	STATegRa_data
Block2	STATegRa_data
Block2.PCA	STATegRa_data
caClass-class	caClass-class
combiningMappings	combiningMappings
createOmicsExpressionSet	createOmicsExpressionSet
createOmicsExpressionSet,matrix-method	createOmicsExpressionSet
ed	STATegRa_data
ed.PCA	STATegRa_data
getInitialData	getInitialData
getInitialData,caClass-method	getInitialData
getLoadings	getLoadings
getLoadings,caClass-method	getLoadings
getMethodInfo	getMethodInfo
getMethodInfo,caClass-method	getMethodInfo
getPreprocessing	getPreprocessing
getPreprocessing,caClass-method	getPreprocessing
getScores	getScores
getScores,caClass-method	getScores
getVAF	getVAF
getVAF,caClass-method	getVAF
holistOmics	holistOmics
holistOmics,list,character-method	holistOmics
mapdata	STATegRa_data
modelSelection	modelSelection
modelSelection,list,numeric,character-method	modelSelection
omicsCompAnalysis	omicsCompAnalysis
omicsCompAnalysis,list,character,character,numeric,numeric-method	omicsCompAnalysis
omicsNPC	omicsNPC
omicsNPC,list,data.frame-method	omicsNPC
omicsNPC,list,missing-method	omicsNPC
PCA.selection	PCA.selection
PCA.selection,matrix,character-method	PCA.selection
plotRes	plotRes
plotRes,caClass,numeric,character,character,logical,character-method	plotRes
plotVAF	plotVAF
plotVAF,caClass-method	plotVAF
selectCommonComps	selectCommonComps
selectCommonComps,matrix,matrix,numeric-method	selectCommonComps
STATegRa	STATegRa
STATegRa-deprecated	STATegRa-deprecated
STATegRaUsersGuide	STATegRaUsersGuide
STATegRa_data	STATegRa_data
STATegRa_data_TCGA_BRCA	STATegRa_data_TCGA_BRCA
TCGA_BRCA_Data	STATegRa_data_TCGA_BRCA
