# SEPA

## Documentation for package ‘SEPA’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

SEPA-package | SEPA: Single-Cell Gene Expression Pattern Analysis
HSMMdata | Sinlge-cell RNA-seq data for HSMM (Human Skeletal Muscle Myoblast)
patternGOanalysis | patternGOanalysis
patternsummary | patternsummary
pseudotime | Pseudo-time Cell Ordering for HSMM Sinlge-cell RNA-seq data
pseudotimepattern | pseudotimepattern
pseudotimevisualize | pseudotimevisualize
SEPA | SEPA: Single-Cell Gene Expression Pattern Analysis
SEPAui | SEPAui
truetime | True Experiment Time Points for HSMM Sinlge-cell RNA-seq data
truetimepattern | truetimepattern
truetimevisualize | truetimevisualize
windowGOanalysis | windowGOanalysis
windowGOvisualize | windowGOvisualize