Package: Rcade
Title: R-based analysis of ChIP-seq And Differential Expression - a
        tool for integrating a count-based ChIP-seq analysis with
        differential expression summary data
Version: 1.16.0
Date: 2012-01-25
Author: Jonathan Cairns
Maintainer: Jonathan Cairns <jmcairns200@gmail.com>
Description: Rcade (which stands for "R-based analysis of ChIP-seq And
        Differential Expression") is a tool for integrating ChIP-seq
        data with differential expression summary data, through a
        Bayesian framework. A key application is in identifing the
        genes targeted by a transcription factor of interest - that is,
        we collect genes that are associated with a ChIP-seq peak, and
        differential expression under some perturbation related to that
        TF.
Depends: R (>= 2.14.0), methods, GenomicRanges, Rsamtools, baySeq
Imports: utils, grDevices, stats, graphics, rgl, plotrix, S4Vectors,
        IRanges, GenomeInfoDb, GenomicAlignments
Suggests: limma, biomaRt, RUnit, BiocGenerics, BiocStyle
License: GPL-2
biocViews: DifferentialExpression, GeneExpression, Transcription,
        ChIPSeq, Sequencing, Genetics
NeedsCompilation: no
Packaged: 2016-10-17 23:31:52 UTC; biocbuild
Built: R 3.3.1; ; 2016-10-18 04:19:22 UTC; windows
