Package: Rariant
Type: Package
Title: Identification and Assessment of Single Nucleotide Variants
        through Shifts in Non-Consensus Base Call Frequencies
Version: 1.10.0
Author: Julian Gehring, Simon Anders, Bernd Klaus
Maintainer: Julian Gehring <jg-bioc@gmx.com>
Imports: methods, S4Vectors, IRanges, GenomeInfoDb, ggbio, ggplot2,
        exomeCopy, SomaticSignatures, Rsamtools, shiny, VGAM, dplyr,
        reshape2
Depends: R (>= 3.0.2), GenomicRanges, VariantAnnotation
Suggests: h5vcData, testthat, knitr, optparse,
        BSgenome.Hsapiens.UCSC.hg19
Description: The 'Rariant' package identifies single nucleotide variants from sequencing data based on the difference of binomially distributed mismatch rates between matched samples.
VignetteBuilder: knitr
Encoding: UTF-8
ByteCompile: TRUE
License: GPL-3
URL: https://github.com/juliangehring/Rariant
BugReports: https://support.bioconductor.org
LazyLoad: yes
biocViews: Sequencing, StatisticalMethod, GenomicVariation,
        SomaticMutation, VariantDetection, Visualization
NeedsCompilation: no
Packaged: 2016-10-18 00:00:31 UTC; biocbuild
Built: R 3.3.1; ; 2016-10-18 04:18:17 UTC; windows
