Package: RIPSeeker
Type: Package
Title: RIPSeeker: a statistical package for identifying
        protein-associated transcripts from RIP-seq experiments
Version: 1.14.0
Date: 2013-Apr-13
Author: Yue Li
Maintainer: Yue Li <yueli@cs.toronto.edu>
Description: Infer and discriminate RIP peaks from RIP-seq alignments
        using two-state HMM with negative binomial emission
        probability. While RIPSeeker is specifically tailored for
        RIP-seq data analysis, it also provides a suite of
        bioinformatics tools integrated within this self-contained
        software package comprehensively addressing issues ranging from
        post-alignments processing to visualization and annotation.
Depends: R (>= 2.15), methods, S4Vectors (>= 0.9.25), IRanges,
        GenomicRanges, SummarizedExperiment, Rsamtools,
        GenomicAlignments, rtracklayer
Suggests: biomaRt, ChIPpeakAnno, parallel, GenomicFeatures
License: GPL-2
URL: http://www.cs.utoronto.ca/~yueli/software.html
Lazyload: yes
Packaged: 2016-10-17 23:32:25 UTC; biocbuild
biocViews: Sequencing, RIPSeq
NeedsCompilation: no
Built: R 3.3.1; ; 2016-10-18 04:29:11 UTC; windows
