calculateCoverageProfile	calculateCoverageProfile
calculateCoverageProfileFromTxdb	calculateCoverageProfileFromTxdb
calculateCoverageProfileList	calculateCoverageProfileList
calculateCoverageProfileListFromTxdb	calculateCoverageProfileListFromTxdb
createControlRegions	createControlRegions
createOrthologousGeneSetList	createOrthologousGeneSetList
extractSequences	extractSequences
geneSets	geneSets
getFeatureBoundaryCoverage	getFeatureBoundaryCoverage
getFeatureBoundaryCoverageBin	getFeatureBoundaryCoverageBin
getMotifSummaryTable	getMotifSummaryTable
getTargetedGenesTable	getTargetedGenesTable
getTxdbFeatures	getTxdbFeatures
getTxdbFeaturesFromGRanges	getTxdbFeaturesFromGRanges
gff	gff
importBed	importBed
importGtf	importGtf
parseMsigdb	parseMsigdb
printMsigdbDataset	printMsigdbDataset
queryGff	queryGff
queryRegions	queryRegions
retrieveOrthologs	retrieveOrthologs
runGSEA	runGSEA
runMotifRG	runMotifRG
runReport	runReport
runTopGO	runTopGO
summarizeQueryRegions	summarizeQueryRegions
