Package: PADOG
Version: 1.16.0
Date: 2015-03-20
Title: Pathway Analysis with Down-weighting of Overlapping Genes
        (PADOG)
Author: Adi Laurentiu Tarca <atarca@med.wayne.edu>; Zhonghui Xu <zhonghui.xu@gmail.com> 
Depends: R (>= 3.0.0), KEGGdzPathwaysGEO, methods,Biobase
Suggests: doParallel, parallel
Maintainer: Adi Laurentiu Tarca <atarca@med.wayne.edu>
Description: This package implements a general purpose gene set
        analysis method called PADOG that downplays the importance of
        genes that apear often accross the sets of genes to be
        analyzed. The package provides also a benchmark for gene set
        analysis methods in terms of sensitivity and ranking using 24
        public datasets from KEGGdzPathwaysGEO package.
License: GPL (>= 2)
URL:
Collate: padog.R compPADOG.R filteranot.R
Imports: limma, AnnotationDbi, GSA, foreach, doRNG, hgu133plus2.db,
        hgu133a.db, KEGG.db, nlme
LazyLoad: yes
biocViews: Microarray, OneChannel, TwoChannel
NeedsCompilation: no
Packaged: 2016-10-17 23:31:22 UTC; biocbuild
Built: R 3.3.1; ; 2016-10-18 03:56:10 UTC; windows
