MethylationSet          MethylationSet instances
MultiDataSet            MultiDataSet: Implementation of the BRGE's
                        basic classes
MultiDataSet-class      MultiDataSet instances
add_eset                Method to add an 'eSet' to 'MultiDataSet'.
add_genexp              Method to add an expression microarray dataset
                        to 'MultiDataSet'.
add_methy               Method to add a slot of methylation to
                        'MultiDataSet'.
add_rnaseq              Method to add an expression RNA seq dataset to
                        'MultiDataSet'.
add_rse                 Method to add a 'RangedSummarizedExperiment' to
                        'MultiDataSet'.
add_snps                Method to add a slot of SNPs to 'MultiDataSet'.
checkProbes             Filter 'MethylationSet' probes
checkSamples            Modify a 'MethylationSet' to only contain
                        common samples
chrNumToChar            Convert chr numbers to chr strings
commonIds               Get the name of the ids common to all datasets
commonSamples           Method to select samples that are present in
                        all datasets.
getMs                   Transforms beta values to M-values
prepareMethylationSet   Generating a 'MethylationSet'
rowRangesElements       Get the name of the datasets that have
                        rowRanges
w_iclusterplus          Apply iClusterPlus clustering method to a
                        MultiDataSet object
w_mcia                  Apply mcia integration method to a MultiDataSet
                        object
