MultiAssayExperiment-package	MultiAssayExperiment
$,MultiAssayExperiment-method	MultiAssayExperiment-class
$<-,MultiAssayExperiment-method	MultiAssayExperiment-class
.ExperimentList	ExperimentList-class
.RangedRaggedAssay	RangedRaggedAssay-class
API	API
assay,ANY,missing-method	ExperimentList-class
assay,ExperimentList,missing-method	ExperimentList-class
assay,MultiAssayExperiment,missing-method	MultiAssayExperiment-class
assay,RangedRaggedAssay,ANY-method	assay-RangedRaggedAssay-ANY-method
complete.cases,MultiAssayExperiment-method	MultiAssayExperiment-class
dim,RangedRaggedAssay-method	RangedRaggedAssay-class
dimnames,ExperimentList-method	ExperimentList-class
dimnames,MultiAssayExperiment-method	MultiAssayExperiment-class
dimnames,RangedRaggedAssay-method	RangedRaggedAssay-class
dimnames<-,RangedRaggedAssay,list-method	RangedRaggedAssay-class
ExperimentList	ExperimentList
ExperimentList,ANY-method	ExperimentList-class
ExperimentList,missing-method	ExperimentList-class
ExperimentList-class	ExperimentList-class
experiments	experiments
experiments,MultiAssayExperiment-method	MultiAssayExperiment-class
experiments<-	experiments-set
experiments<-,MultiAssayExperiment,ExperimentList-method	MultiAssayExperiment-class
getHits	getHits
getHits,ANY,character-method	getHits
getHits,ANY,GRanges-method	getHits
getHits,GRanges,GRanges-method	getHits
getHits,MultiAssayExperiment,character-method	getHits
getHits,MultiAssayExperiment,GRanges-method	getHits
getHits,RangedRaggedAssay,character-method	RangedRaggedAssay-class
getHits,RangedSummarizedExperiment,GRanges-method	getHits
hasAssay	hasAssay
isEmpty,MultiAssayExperiment-method	MultiAssayExperiment-class
length,MultiAssayExperiment-method	MultiAssayExperiment-class
listToMap	mapToList
mapToList	mapToList
metadata,MultiAssayExperiment-method	MultiAssayExperiment-class
metadata<-,MultiAssayExperiment-method	MultiAssayExperiment-class
MultiAssayExperiment	MultiAssayExperiment
MultiAssayExperiment-class	MultiAssayExperiment-class
names,MultiAssayExperiment-method	MultiAssayExperiment-class
ncol,RangedRaggedAssay-method	RangedRaggedAssay-class
nrow,RangedRaggedAssay-method	RangedRaggedAssay-class
pData,MultiAssayExperiment-method	MultiAssayExperiment-class
pData<-,MultiAssayExperiment,DataFrame-method	MultiAssayExperiment-class
PrepMultiAssay	PrepMultiAssay
RangedRaggedAssay	RangedRaggedAssay
RangedRaggedAssay-class	RangedRaggedAssay-class
sampleMap	sampleMap
sampleMap,MultiAssayExperiment-method	MultiAssayExperiment-class
sampleMap<-	sampleMap-set
sampleMap<-,MultiAssayExperiment,DataFrame-method	MultiAssayExperiment-class
show,ExperimentList-method	ExperimentList-class
show,MultiAssayExperiment-method	MultiAssayExperiment-class
show,RangedRaggedAssay-method	RangedRaggedAssay-class
subsetByAssay	subsetByAssay
subsetByAssay,MultiAssayExperiment-method	subsetByAssay
subsetByColumn	subsetByColumn
subsetByColumn,MultiAssayExperiment,ANY-method	subsetByColumn
subsetByColumn,MultiAssayExperiment,character-method	subsetByColumn
subsetByColumn,MultiAssayExperiment,List-method	subsetByColumn
subsetByColumn,MultiAssayExperiment,list-method	subsetByColumn
subsetByRow	subsetByRow
subsetByRow,MultiAssayExperiment,ANY-method	subsetByRow
subsetByRow,MultiAssayExperiment,GRanges-method	subsetByRow
subsetByRow,MultiAssayExperiment,GRangesORcharacter-method	subsetByRow
subsetByRow,MultiAssayExperiment,List-method	subsetByRow
subsetByRow,MultiAssayExperiment,list-method	subsetByRow
updateObject,MultiAssayExperiment-method	MultiAssayExperiment-class
[,MultiAssayExperiment,ANY,ANY,ANY-method	MultiAssayExperiment-class
[,MultiAssayExperiment,ANY-method	MultiAssayExperiment-class
[,RangedRaggedAssay,ANY,ANY,ANY-method	RangedRaggedAssay-class
[,RangedRaggedAssay,ANY-method	RangedRaggedAssay-class
[,RangedRaggedAssay,GRanges,ANY,ANY-method	RangedRaggedAssay-class
[,RangedRaggedAssay,GRanges-method	RangedRaggedAssay-class
