Package: MatrixRider
Type: Package
Title: Obtain total affinity and occupancies for binding site matrices
        on a given sequence
Version: 1.6.0
Date: 2015-11-02
Author: Elena Grassi
Maintainer: Elena Grassi <grassi.e@gmail.com>
Description: Calculates a single number for a whole sequence that
        reflects the propensity of a DNA binding protein to interact
        with it. The DNA binding protein has to be described with a PFM
        matrix, for example gotten from Jaspar.
biocViews: GeneRegulation, Genetics, MotifAnnotation
License: GPL-3
Depends: R (>= 3.1.2)
Imports: methods, TFBSTools, IRanges, XVector, Biostrings
Suggests: RUnit, BiocGenerics, BiocStyle, JASPAR2014
LinkingTo: IRanges, XVector, Biostrings, S4Vectors
NeedsCompilation: yes
Packaged: 2016-10-18 00:11:29 UTC; biocbuild
Built: R 3.3.1; i386-w64-mingw32; 2016-10-18 03:21:37 UTC; windows
Archs: i386, x64
