# Mixture Models for Single-Cell Assays

## Documentation for package ‘MIMOSA’ version 1.12.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

MIMOSA-package | MIMOSA: Mixture Models for Single Cell Assays
.fitMCMC | Fit the MIMOSA model via MCMC
asinh_trans | asinh_trans
BetaMixResult-class | The output of fitting Beta-Binomial EM implementation 'BetaMix'.
boxplotMIMOSAResultList | boxplotMIMOSAResultList
combine.MIMOSA | Combine MIMOSAResultList objects
ConstructMIMOSAExpressionSet | A wrapper for constructing an Expression Set for MIMOSA
countsTable | Extract the table of counts from a MIMOSA model
countsTable-method | Extract the table of counts from a MIMOSA model
countsTable.MIMOSAResultList | Extract the table of counts from a MIMOSA model
fdr | Compute the fdr (q-value) from posterior probabilities
fdr.matrix | Compute the fdr (q-value) from posterior probabilities
fdr.MIMOSAResult | Compute the fdr (q-value) from posterior probabilities
fdr.MIMOSAResultList | Compute the fdr (q-value) from posterior probabilities
getW | Extract the posterior probabilities of response from a MIMOSA model
getW.MIMOSAResult | Extract the posterior probabilities of response from a MIMOSA model
getW.MIMOSAResultList | Extract the posterior probabilities of response from a MIMOSA model
getZ | Extract the posterior probabilities of response from a MIMOSA model
getZ.MIMOSAResult | Extract the posterior probabilities of response from a MIMOSA model
getZ.MIMOSAResultList | Extract the posterior probabilities of response from a MIMOSA model
ICS | Stimulated and unstimulated T-cell counts for an ICS assay
MDMix | EM fitting of the Multinomial Dirichlet MIMOSA model.
MIMOSA | Fit a MIMOSA Model
MIMOSA-method | Fit a MIMOSA Model
MIMOSAExpressionSet | Construct an ExpressionSet for MIMOSA
MIMOSAResult | Stores the result of a MIMOSA fitted model
MIMOSAResult-class | Stores the result of a MIMOSA fitted model
pData-method | pData extract the phenoData table from a MIMOSA result
pData.MIMOSAResultList | pData extract the phenoData table from a MIMOSA result
print.MIMOSAResultList | Print a MIMOSAResultList
show | show
show-method | show
volcanoPlot | Volcano plot for a MIMOSA model