Package: LINC
Type: Package
Title: co-expression of lincRNAs and protein-coding genes
Version: 1.2.0
Date: 2016-10-13
Author: Manuel Goepferich, Carl Herrmann
Maintainer: Manuel Goepferich <manuel.goepferich@gmx.de>
Depends: R (>= 3.3.1), methods, stats
Description: This package provides methods to compute co-expression networks of lincRNAs and protein-coding genes.
             Biological terms associated with the sets of protein-coding genes predict the biological contexts of lincRNAs according to the 'Guilty by Association' approach.
biocViews: Software, BiologicalQuestion, GeneRegulation, GeneExpression
License: Artistic-2.0
LinkingTo: Rcpp
Imports: Rcpp (>= 0.11.0), DOSE, ggtree, gridExtra, ape, grid, png,
        Biobase, sva, reshape2, utils, grDevices, org.Hs.eg.db,
        clusterProfiler, ggplot2, ReactomePA
VignetteBuilder: knitr
Suggests: RUnit, BiocGenerics, knitr, biomaRt
NeedsCompilation: yes
Packaged: 2016-10-18 00:49:09 UTC; biocbuild
Built: R 3.3.1; i386-w64-mingw32; 2016-10-18 03:15:17 UTC; windows
Archs: i386, x64
