Package: Harman
Type: Package
Title: The removal of batch effects from datasets using a PCA and
        constrained optimisation based technique
Version: 1.2.0
Date: 2016-03-31
Authors@R: c(person("Josh", "Bowden", role = "aut", email =
        "josh.bowden@csiro.au"), person("Jason", "Ross", role =
        c("aut", "cre"), email = "jason.ross@csiro.au"),
        person("Yalchin", "Oytam", role = "aut", email =
        "yalchin.oytam@csiro.au") )
Description: Harman is a PCA and constrained optimisation based
        technique that maximises the removal of batch effects from
        datasets, with the constraint that the probability of
        overcorrection (i.e. removing genuine biological signal along
        with batch noise) is kept to a fraction which is set by the
        end-user.
NeedsCompilation: yes
Suggests: HarmanData, BiocGenerics, BiocStyle, knitr, rmarkdown, RUnit,
        RColorBrewer, bladderbatch, limma, minfi, lumi, msmsEDA,
        affydata, minfiData, sva
Depends: R (>= 3.3)
Imports: Rcpp (>= 0.11.2), graphics, stats
LinkingTo: Rcpp
License: GPL-3 + file LICENCE
LazyData: true
biocViews: BatchEffect, Microarray, MultipleComparison,
        PrincipalComponent, Normalization, Preprocessing,
        DNAMethylation, Transcription, Software, StatisticalMethod
VignetteBuilder: knitr
URL: http://www.bioinformatics.csiro.au/harman/
BugReports: https://github.com/JasonR055/Harman/issues
RoxygenNote: 5.0.1
Author: Josh Bowden [aut], Jason Ross [aut, cre], Yalchin Oytam [aut]
Maintainer: Jason Ross <jason.ross@csiro.au>
Packaged: 2016-10-18 00:35:26 UTC; biocbuild
Built: R 3.3.1; i386-w64-mingw32; 2016-10-18 02:56:53 UTC; windows
Archs: i386, x64
