assay,RangedVcfStack,ANY-method	VcfStack-class
assay,VcfStack,ANY-method	VcfStack-class
class:GenomicFiles	GenomicFiles-class
class:VcfStack	VcfStack-class
colData,VcfStack-method	VcfStack-class
colData<-,GenomicFiles,DataFrame-method	GenomicFiles-class
colData<-,VcfStack,DataFrame-method	VcfStack-class
colnames,VcfStack-method	VcfStack-class
dim,VcfStack-method	VcfStack-class
dimnames,VcfStack-method	VcfStack-class
dimnames<-,GenomicFiles,list-method	GenomicFiles-class
files	GenomicFiles-class
files,GenomicFiles-method	GenomicFiles-class
files,VcfStack-method	VcfStack-class
files<-	GenomicFiles-class
files<-,GenomicFiles,character-method	GenomicFiles-class
files<-,GenomicFiles,List-method	GenomicFiles-class
files<-,VcfStack,character-method	VcfStack-class
findTypeRegistry	registry-utils
GenomicFiles	GenomicFiles-class
GenomicFiles,GenomicRangesORGRangesList,character-method	GenomicFiles-class
GenomicFiles,GenomicRangesORGRangesList,List-method	GenomicFiles-class
GenomicFiles,GenomicRangesORGRangesList,list-method	GenomicFiles-class
GenomicFiles,missing,ANY-method	GenomicFiles-class
GenomicFiles,missing,missing-method	GenomicFiles-class
GenomicFiles-class	GenomicFiles-class
GenomicFiles-deprecated	GenomicFiles-deprecated
getVCFPath	GenomicFiles-deprecated
isPacked	pack-methods
makeFileType	registry-utils
pack	pack-methods
pack,GRanges-method	pack-methods
paths1kg	VcfStack-class
RangedVcfStack	VcfStack-class
RangedVcfStack-class	VcfStack-class
readVcfStack	VcfStack-class
reduceByFile	reduceByFile-methods
reduceByFile,GenomicFiles,missing-method	reduceByFile-methods
reduceByFile,GRanges,ANY-method	reduceByFile-methods
reduceByFile,GRangesList,ANY-method	reduceByFile-methods
reduceByRange	reduceByRange-methods
reduceByRange,GenomicFiles,missing-method	reduceByRange-methods
reduceByRange,GRanges,ANY-method	reduceByRange-methods
reduceByRange,GRangesList,ANY-method	reduceByRange-methods
reduceByYield	reduceByYield
reduceFiles	reduceByFile-methods
reduceRanges	reduceByRange-methods
REDUCEsampler	reduceByYield
registerFileType	registry-utils
registry-utils	registry-utils
rownames,VcfStack-method	VcfStack-class
rowRanges,RangedVcfStack-method	VcfStack-class
rowRanges<-,RangedVcfStack,GRanges-method	VcfStack-class
seqinfo,VcfStack-method	VcfStack-class
seqinfo<-,RangedVcfStack-method	VcfStack-class
seqinfo<-,VcfStack-method	VcfStack-class
show,GenomicFiles-method	GenomicFiles-class
show,VcfStack-method	VcfStack-class
unpack	unpack-methods
unpack,List,GRangesList-method	unpack-methods
unpack,list,GRangesList-method	unpack-methods
VcfStack	VcfStack-class
VcfStack-class	VcfStack-class
[,GenomicFiles,ANY,ANY,ANY-method	GenomicFiles-class
[,GenomicFiles,ANY,ANY-method	GenomicFiles-class
[,RangedVcfStack,ANY,ANY,ANY-method	VcfStack-class
[,RangedVcfStack,ANY,ANY-method	VcfStack-class
[,VcfStack,ANY,ANY,ANY-method	VcfStack-class
[,VcfStack,ANY,ANY-method	VcfStack-class
