bcb46671f9de67f4c98c54cd2fb7b0a6 *CITATION
17af4089c78886981aedb04ee27c1e56 *DESCRIPTION
e45bb29cb7cd6e3284a87186a44f2ea7 *INDEX
a26d68d4c964e146d42102aa9a0de4f2 *Meta/Rd.rds
7ec1ffa89e453695ba8cfba9a650cca1 *Meta/hsearch.rds
9bb206660c1d17676a9c751f6e14094b *Meta/links.rds
20eec9acc8d51d3acd9df134864c45b9 *Meta/nsInfo.rds
121fa2a66918f69b9889b5f983423236 *Meta/package.rds
748293cda54c67ea631512dd1c432fde *Meta/vignette.rds
12054238cf6676989ed4d72ed531fcde *NAMESPACE
35777a151b7c9c7864d07ed343a38240 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/GenomicAlignments
34ca990081f211698f21b3bd645504cb *R/GenomicAlignments.rdb
49b2d1169511477da23aa13742a7d80d *R/GenomicAlignments.rdx
6b26faf2624597ddd375a4cac1f8cefd *doc/GenomicAlignmentsIntroduction.R
c455eefc786bb4aa0a022aefe966557e *doc/GenomicAlignmentsIntroduction.Rnw
dfa53b75e90cff7b5e872bae7c76f1b3 *doc/GenomicAlignmentsIntroduction.pdf
428a1da25e47e2aaede5d5f73de4566f *doc/OverlapEncodings.R
76b2942c81eddc7933f194a3edcb8a0a *doc/OverlapEncodings.Rnw
8f4bc90a0d96b2dfd2a84d015945823d *doc/OverlapEncodings.pdf
25583b459e881b3bf7d0ca86e7d9c180 *doc/WorkingWithAlignedNucleotides.R
7ffa5eec2eb7b955ca22579bb869bff8 *doc/WorkingWithAlignedNucleotides.Rnw
0ef34c00bac94433b35e1bae2ee7a3c3 *doc/WorkingWithAlignedNucleotides.pdf
f3fa15b65377aac5ee9c663f6bd9e203 *doc/index.html
b2fd7039ad1baf6bf1633354bd8fa48a *doc/summarizeOverlaps.R
5398e425480c1f764c0dce679bd32525 *doc/summarizeOverlaps.Rnw
3f6cb02316f4f0c601596c3f6a4b1e8b *doc/summarizeOverlaps.pdf
1c380f8159fda8fad5d0d4902ae9ea23 *extdata/sm_treated1.bam
af83f784077fcced98e3603bb7ad7a4e *extdata/sm_untreated1.bam
2a1783f6a0758adcc3c79283e470c76d *help/AnIndex
43fabeba28e2433ff42bf6399bd4a767 *help/GenomicAlignments.rdb
3c61a72af80d0d49e9f9ab515c8ee062 *help/GenomicAlignments.rdx
7c10229199955554f190c57fcd33a661 *help/aliases.rds
74fb50e0c292557993218caf13c66387 *help/paths.rds
e72ea0948e6140b25ad85fa15b6dcaca *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
416ef565d52730a1d72027ebf474bcce *libs/i386/GenomicAlignments.dll
32a8156949b5d37b852f205273e49034 *libs/x64/GenomicAlignments.dll
006658c9b51f09d15581526e4c1b8d30 *unitTests/test_GAlignments-class.R
4c48baf83a7aec1f6f445fa103342c05 *unitTests/test_GAlignmentsList-class.R
8ebc949e316f84ed21c18fdf971de87f *unitTests/test_cigar-utils.R
c494127673b074fbd5bbecb4b5fe80f3 *unitTests/test_coordinate-mapping-methods.R
229bfd98328fafca3f1ad0a5e5e1d307 *unitTests/test_findSpliceOverlaps-methods.R
03c20128d1742334efd9c564122e1e4b *unitTests/test_intra-range-methods.R
a369c93b31e2e090aba36dcab66fa759 *unitTests/test_readGAlignmentPairs.R
c526cbfe22b11dcb065c9c68692e5588 *unitTests/test_readGAlignments.R
8e3c3cb75da36b4ab3daa58c6b46bef7 *unitTests/test_readGAlignmentsList.R
3ee2246e46dee0999386dd9538c4a5cc *unitTests/test_summarizeOverlaps-methods.R
