# GUIDE-seq analysis pipeline

## Documentation for package ‘GUIDEseq’ version 1.4.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

GUIDEseq-package | Analysis of GUIDE-seq
annotateOffTargets | Annotate offtargets with gene name
combineOfftargets | Combine Offtargets
getPeaks | Obtain peaks from GUIDE-seq
getUniqueCleavageEvents | Using UMI sequence to obtain the starting sequence library
GUIDEseq | Analysis of GUIDE-seq
GUIDEseqAnalysis | Analysis pipeline for GUIDE-seq dataset
mergePlusMinusPeaks | Merge peaks from plus strand and minus strand
offTargetAnalysisOfPeakRegions | Offtarget Analysis of GUIDE-seq peaks
peaks.gr | example cleavage sites
uniqueCleavageEvents | example unique cleavage sites