ENCODExplorer           ENCODExplorer
clean_column            Clean a single column of the data.frame
clean_table             Clean a data.frame that was produced by
                        extract_table
createDesign            Create a design for the files associated with
                        the result of a queryEncode, fuzzySearch
                        research or a 'data.table' from createDesign.
downloadEncode          downloadEncode is used to download a serie of
                        files or datasets using their accession.
encode_df               Metadata from the ENCODE database in a R
                        object. The tables were generated with the
                        'prepare_ENCODEdb' function.
export_ENCODEdb_matrix
                        Extract essential informations from a list of
                        data.table in a 'list' of 'data.table's
extract_table           Extract a data.frame corresponding to a table
                        in ENCODE database
fuzzySearch             Fuzzysearch is a searching function for a
                        string or a list of string within the encode_df
                        'data.table'. For faster processing, pass
                        encode_df object as database parameter.
get_encode_types        A list of known tables from ENCODE database.
get_schemas             Extract the schemas from ENCODE's github
prepare_ENCODEdb        Create the list of data.table for the tables in
                        ENCODE
queryEncode             Produce a subset of data following predefined
                        criteria
searchEncode            Simulate a query on ENCODE website and return
                        the result as a 'data.frame'
searchToquery           Convert searchEncode output in queryEncode
                        output.
shinyEncode             Launch a shiny interface for ENCODExplorer
