Package: ELMER
Title: Inferring Regulatory Element Landscapes and Transcription Factor
        Networks Using Cancer Methylomes
Version: 1.4.1
Authors@R: c(person("Lijing", "Yao", role = c("aut"),
			email = "lijingya@usc.edu"),
		person("Ben", "Berman", role = "aut"),
		person("Peggy", "Farnham", role = "aut"),
		person("Hui", "Shen", role = "ctb"),
		person("Peter", "Laird", role = "ctb"),
		person("Simon","Coetzee", role = c("cre","ctb"),
                       email = "Simon.Coetzee@cshs.org"))
Description: 
	ELMER is designed to use DNA methylation and gene expression from a large number of samples to infere regulatory element landscape and transcription factor network in primary tissue.
Depends: R (>= 3.2.0), IlluminaHumanMethylation450kanno.ilmn12.hg19,
        Homo.sapiens, ELMER.data
License: GPL-3
LazyData: true
VignetteBuilder: knitr
Imports:
        methods,BiocGenerics,S4Vectors,IRanges,GenomeInfoDb,GenomicRanges,ggplot2,reshape,grid,gridExtra,minfi,GenomicFeatures
Suggests: parallel, snow, BiocStyle, knitr, R.utils, downloader
biocViews: DNAMethylation, GeneExpression, MotifAnnotation, Software,
        GeneRegulation
NeedsCompilation: no
Packaged: 2017-04-08 00:11:19 UTC; biocbuild
Author: Lijing Yao [aut],
  Ben Berman [aut],
  Peggy Farnham [aut],
  Hui Shen [ctb],
  Peter Laird [ctb],
  Simon Coetzee [cre, ctb]
Maintainer: Simon Coetzee <Simon.Coetzee@cshs.org>
Built: R 3.3.3; ; 2017-04-08 02:13:18 UTC; windows
