CausalR-package	CausalR-package
AddIDsToVertices	AddIDsToVertices
AddWeightsToEdges	AddWeightsToEdges
AnalyseExperimentalData	AnalyseExperimentalData
AnalysePredictionsList	AnalysePredictionsList
CalculateEnrichmentPValue	CalculateEnrichmentPValue
CalculateSignificance	CalculateSignificance
CalculateSignificanceUsingCubicAlgorithm	CalculateSignificanceUsingCubicAlgorithm
CalculateSignificanceUsingCubicAlgorithm1b	CalculateSignificanceUsingCubicAlgorithm1b
CalculateSignificanceUsingQuarticAlgorithm	CalculateSignificanceUsingQuarticAlgorithm
CalculateTotalWeightForAllContingencyTables	CalculateTotalWeightForAllContingencyTables
CalculateWeightGivenValuesInThreeByThreeContingencyTable	CalculateWeightGivenValuesInThreeByThreeContingencyTable
CausalR	CausalR-package
CheckPossibleValuesAreValid	CheckPossibleValuesAreValid
CheckRowAndColumnSumValuesAreValid	CheckRowAndColumnSumValuesAreValid
CompareHypothesis	CompareHypothesis
ComputeFinalDistribution	ComputeFinalDistribution
ComputePValueFromDistributionTable	ComputePValueFromDistributionTable
CreateCCG	CreateCCG
CreateCG	CreateCG
CreateNetworkFromTable	CreateNetworkFromTable
DetermineInteractionTypeOfPath	DetermineInteractionTypeOfPath
FindApproximateValuesThatWillMaximiseDValue	FindApproximateValuesThatWillMaximiseDValue
FindIdsOfConnectedNodesInSubgraph	FindIdsOfConnectedNodesInSubgraph
FindMaximumDValue	FindMaximumDValue
GetAllPossibleRoundingCombinations	GetAllPossibleRoundingCombinations
GetApproximateMaximumDValueFromThreeByTwoContingencyTable	GetApproximateMaximumDValueFromThreeByTwoContingencyTable
GetApproximateMaximumDValueFromTwoByTwoContingencyTable	GetApproximateMaximumDValueFromTwoByTwoContingencyTable
GetCombinationsOfCorrectandIncorrectPredictions	GetCombinationsOfCorrectandIncorrectPredictions
GetExplainedNodesOfCCG	GetExplainedNodesOfCCG
GetInteractionInformation	GetInteractionInformation
GetMatrixOfCausalRelationships	GetMatrixOfCausalRelationships
GetMaxDValueForAFamily	GetMaxDValueForAFamily
GetMaxDValueForAThreeByTwoFamily	GetMaxDValueForAThreeByTwoFamily
GetMaximumDValueFromTwoByTwoContingencyTable	GetMaximumDValueFromTwoByTwoContingencyTable
GetNodeID	GetNodeID
GetNodeName	GetNodeName
GetNumberOfPositiveAndNegativeEntries	GetNumberOfPositiveAndNegativeEntries
GetPathsInSifFormat	GetPathsInSifFormat
GetRegulatedNodes	GetRegulatedNodes
GetRowAndColumnSumValues	GetRowAndColumnSumValues
GetScoreForNumbersOfCorrectandIncorrectPredictions	GetScoreForNumbersOfCorrectandIncorrectPredictions
GetScoresForSingleNode	GetScoresForSingleNode
GetScoresWeightsMatrix	GetScoresWeightsMatrix
GetScoresWeightsMatrixByCubicAlg	GetScoresWeightsMatrixByCubicAlg
GetSetOfDifferentiallyExpressedGenes	GetSetOfDifferentiallyExpressedGenes
GetSetOfSignificantPredictions	GetSetOfSignificantPredictions
GetShortestPathsFromCCG	GetShortestPathsFromCCG
GetWeightForNumbersOfCorrectandIncorrectPredictions	GetWeightForNumbersOfCorrectandIncorrectPredictions
GetWeightsAboveHypothesisScoreAndTotalWeights	GetWeightsAboveHypothesisScoreAndTotalWeights
GetWeightsAboveHypothesisScoreForAThreeByTwoTable	GetWeightsAboveHypothesisScoreForAThreeByTwoTable
GetWeightsFromInteractionInformation	GetWeightsFromInteractionInformation
MakePredictions	MakePredictions
MakePredictionsFromCCG	MakePredictionsFromCCG
MakePredictionsFromCG	MakePredictionsFromCG
OrderHypotheses	OrderHypotheses
PlotGraphWithNodeNames	PlotGraphWithNodeNames
PopulateTheThreeByThreeContingencyTable	PopulateTheThreeByThreeContingencyTable
PopulateTwoByTwoContingencyTable	PopulateTwoByTwoContingencyTable
ProcessExperimentalData	ProcessExperimentalData
RankTheHypotheses	RankTheHypotheses
ReadExperimentalData	ReadExperimentalData
ReadSifFileToTable	ReadSifFileToTable
RemoveIDsNotInExperimentalData	RemoveIDsNotInExperimentalData
runRankHypothesis	runRankHypothesis
runSCANR	runSCANR
ScoreHypothesis	ScoreHypothesis
ValidateFormatOfDataTable	ValidateFormatOfDataTable
ValidateFormatOfTable	ValidateFormatOfTable
WriteExplainedNodesToSifFile	WriteExplainedNodesToSifFile
