An R interface for computational modeling of tumor progression

Documentation for package ‘CancerInSilico’ version 1.0.0

CancerInSilico-package	CancerInSilico
CancerInSilico	CancerInSilico
CellModel-class	CellModel
getAxisAngle	'getAxisAngle' get the axis angle of each cell
getAxisLength	'getAxisLength' get the axis length of each cell
getCoordinates	'getCoordinates' get a two dimensional matrix of all the cell coordinates
getCycleLengths	'getCycleLengths' return the cycle lengths of each cells at time
getDensity	'getDensity' gets the density of cells at a given time
getGrowthRates	'getGrowthRates' get the model growth rates of each cell
getNumberOfCells	'getNumberOfCells' get the number of cells alive
getParameters	'getParameters' get a named list of parameters in the model
getRadii	'getRadii' get the radius of each cell
interactivePlot	'interactivePlot' plots a CellModel and allows the user to control the plot with various commands
plotCells	'plotCell' plots a CellModel at a given time
runCancerSim	'runCancerSim' runs a cell-based model of cancer
runDrasdoHohme	'runDrasdoHohme' runs the model based on Drasdo and Hohme (2003)
show-method	'show' display summary of CellModel class
timeToRow	'timeToRow' return the correct row in the mCells list corresponding to a given time